Evidence map›Paper›PMID 32504625›Full record

ArticleJournal of molecular biology2020

Hybrid Thermophilic/Mesophilic Enzymes Reveal a Role for Conformational Disorder in Regulation of Bacterial Enzyme I.

Rochelle R Dotas, Trang T Nguyen, Charles E Stewart, Rodolfo Ghirlando, Davit A Potoyan, Vincenzo Venditti

Abstract read
In one paragraph

Article in Journal of molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Temperature-sensitive contacts in disordered loops tune enzyme I activity.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Review
  16. Article
  17. Article
  18. Science advances · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rochelle R DotasDepartment of Chemistry, Iowa State University, Ames, IA 50011, USA.
Trang T NguyenDepartment of Chemistry, Iowa State University, Ames, IA 50011, USA.
Charles E StewartMacromolecular X-ray Crystallography Facility, Office of Biotechnology, Iowa State University, Ames, IA 50011, USA.
Rodolfo GhirlandoLaboratory of Molecular Biology, NIDDK, National Institutes of Health, Bethesda, MD 20892, USA.
Davit A PotoyanDepartment of Chemistry, Iowa State University, Ames, IA 50011, USA; Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA 50011, USA. Electronic address: potoyan@iastate.edu.
Vincenzo VendittiDepartment of Chemistry, Iowa State University, Ames, IA 50011, USA; Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA 50011, USA. Electronic address: venditti@iastate.edu.

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
Biophysics of Macromolecular ComplexesZIADK033007 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI BUCHANAN, SUSAN · 2009 to 2024
$4.9M
Atomic-level characterization of self-regulatory mechanisms in large multidomain enzymesR35GM133488 · NIGMS · IOWA STATE UNIVERSITY · PI Vincenzo Venditti · 2019 to 2026
$2.9M
NIGMS NIH HHS P30 GM124169NIGMS NIH HHS R35 GM133488
6 · The paper itself

Abstract

Conformational disorder is emerging as an important feature of biopolymers, regulating a vast array of cellular functions, including signaling, phase separation, and enzyme catalysis. Here we combine NMR, crystallography, computer simulations, protein engineering, and functional assays to investigate the role played by conformational heterogeneity in determining the activity of the C-terminal domain of bacterial Enzyme I (EIC). In particular, we design chimeric proteins by hybridizing EIC from thermophilic and mesophilic organisms, and we characterize the resulting constructs for structure, dynamics, and biological function. We show that EIC exists as a mixture of active and inactive conformations and that functional regulation is achieved by tuning the thermodynamic balance between active and inactive states. Interestingly, we also present a hybrid thermophilic/mesophilic enzyme that is thermostable and more active than the wild-type thermophilic enzyme, suggesting that hybridizing thermophilic and mesophilic proteins is a valid strategy to engineer thermostable enzymes with significant low-temperature activity.

Indexed as

BacillotaBacterial ProteinsCatalysisEnzyme ActivationEnzyme StabilityEscherichia coliModels, MolecularPhosphoenolpyruvate Sugar Phosphotransferase SystemPhosphotransferases (Nitrogenous Group Acceptor)Protein ConformationProtein DomainsProtein EngineeringRecombinant Fusion ProteinsThermodynamicsBacterial Proteinsphosphoenolpyruvate-protein phosphotransferasePhosphoenolpyruvate Sugar Phosphotransferase SystemPhosphotransferases (Nitrogenous Group Acceptor)Recombinant Fusion Proteinsbacterial PTSenzyme regulationmetadynamicsNMR relaxationprotein dynamics

Identifiers

PMID32504625
PMCPMC7963438

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.