Evidence map›Paper›PMID 32504559›Full record

ArticleDevelopmental cell2020

Single-Cell RNA Sequencing of Human, Macaque, and Mouse Testes Uncovers Conserved and Divergent Features of Mammalian Spermatogenesis.

Adrienne Niederriter Shami, Xianing Zheng, Sarah K Munyoki, Qianyi Ma, Gabriel L Manske, Christopher D Green, Meena Sukhwani, Kyle E Orwig, Jun Z Li, Saher Sue Hammoud

Open access · greenAbstract read
In one paragraph

Article in Developmental cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 177 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
177citing papers in PubMed, 1 pooled it
34.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

177 citing papers in PubMed, 1 synthesis or guideline pooled it, 284 citations in OpenAlex.

  1. Metabolic transitions define spermatogonial stem cell maturation.Human reproduction (Oxford, England) · 2022
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  18. The molecular evolution of vertebrate organs.Nature ecology & evolution · 2026
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117 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Adrienne Niederriter ShamiDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, USA.
Xianing ZhengDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, USA.
Sarah K MunyokiDepartment of Obstetrics, Gynecology, and Reproductive Sciences, Integrative Systems Biology Graduate Program, Magee-Womens Research Institute, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Qianyi MaDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, USA.
Gabriel L ManskeCellular and Molecular Biology Program, University of Michigan, Ann Arbor, MI, USA.
Christopher D GreenDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, USA.
Meena SukhwaniDepartment of Obstetrics, Gynecology, and Reproductive Sciences, Integrative Systems Biology Graduate Program, Magee-Womens Research Institute, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Kyle E OrwigDepartment of Obstetrics, Gynecology, and Reproductive Sciences, Integrative Systems Biology Graduate Program, Magee-Womens Research Institute, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA. Electronic address: korwig@mwri.magee.edu.
Jun Z LiDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, USA; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA. Electronic address: junzli@med.umich.edu.
Saher Sue HammoudDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, USA; Cellular and Molecular Biology Program, University of Michigan, Ann Arbor, MI, USA; Department of Obstetrics and Gynecology, University of Michigan, Ann Arbor, MI, USA; Department of Urology, University of Michigan, Ann Arbor, MI, USA. Electronic address: hammou@med.umich.edu.
University of Michigan · USUniversity of Pittsburgh · US

Funding

MICHIGAN MEDICAL SCIENTIST TRAINING PROGRAMT32GM007863 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI COLLINS, KATHLEEN L. · 1985 to 2024
$38.3M
Transplant CoreP01HD075795 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI SHETTY, GUNAPALA · 2014 to 2018
$7.0M
Cellular Mechanisms of Chemotherapy-induced Male Infertility: Stem Cell or Niche?R01HD076412 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI ORWIG, KYLE EDWIN · 2014 to 2018
$3.0M
Contributions of Sperm Chromatin to development: A Myth or Reality?DP2HD091949 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HAMMOUD, SAHER SUE · 2016 to 2016
$2.3M
Career Training in Reproductive BiologyT32HD079342 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Suzanne M MOENTER · 2014 to 2026
$2.3M
Improving Fertility Preservation in Boys with CancerR01HD092084 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI ORWIG, KYLE EDWIN · 2017 to 2019
$1.1M
Reproductive Development from Gonads to FetusesT32HD087194 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI ORWIG, KYLE EDWIN · 2017 to 2021
$925k
Comprehensive mapping of mouse testis cell types and spermatogenic stages by single-cell RNA sequencingR21HD090371 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HAMMOUD, SAHER SUE · 2018 to 2019
$444k
Elucidating the Role of TCF21+ Mesenchymal Cells in Testis Tissue Homeostasis and RegenerationF30HD097961 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHAMI, ADRIENNE NIEDERRITER · 2018 to 2020
$108k
High Resolution Transcriptome Analysis of the Primate TestisF31HD101323 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI MUNYOKI, SARAH · 2020 to 2021
$78k
NICHD NIH HHS DP2 HD091949NICHD NIH HHS F30 HD097961NICHD NIH HHS F31 HD101323NICHD NIH HHS P01 HD075795NICHD NIH HHS R01 HD076412NICHD NIH HHS R01 HD092084NICHD NIH HHS R21 HD090371NICHD NIH HHS T32 HD079342NICHD NIH HHS T32 HD087194NIGMS NIH HHS T32 GM007863
6 · The paper itself

Abstract

Spermatogenesis is a highly regulated process that produces sperm to transmit genetic information to the next generation. Although extensively studied in mice, our current understanding of primate spermatogenesis is limited to populations defined by state-specific markers from rodent data. As between-species differences have been reported in the duration and differentiation hierarchy of this process, it remains unclear how molecular markers and cell states are conserved or have diverged from mice to man. To address this challenge, we employ single-cell RNA sequencing to identify transcriptional signatures of major germ and somatic cell types of the testes in human, macaque, and mice. This approach reveals similarities and differences in expression throughout spermatogenesis, including the stem/progenitor pool of spermatogonia, markers of differentiation, potential regulators of meiosis, RNA turnover during spermatid differentiation, and germ cell-soma communication. These datasets provide a rich foundation for future targeted mechanistic studies of primate germ cell development and in vitro gametogenesis.

Indexed as

Single-Cell AnalysisAnimalsCell DifferentiationGene Expression Regulation, DevelopmentalHumansMacacaMaleMeiosisMiceSequence Analysis, RNASpermatogenesisSpermatogoniaTestisevolutionmeiosissignalingsingle-cell RNA-seqsomaspermatogenesisspermatogonial stem cell

Identifiers

PMID32504559
PMCPMC7879256
OpenAlexW3032943211

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.