Evidence map›Paper›PMID 32504494›Full record

ArticleNucleic acids research2020

Pathological mutations in PNKP trigger defects in DNA single-strand break repair but not DNA double-strand break repair.

Ilona Kalasova, Richard Hailstone, Janin Bublitz, Jovel Bogantes, Winfried Hofmann, Alejandro Leal, Hana Hanzlikova, Keith W Caldecott

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 45 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 4 countries.

Ilona KalasovaDepartment of Genome Dynamics, Institute of Molecular Genetics of the Czech Academy of Sciences, Prague 4, 142 20, Czech Republic.
Richard HailstoneGenome Damage and Stability Centre, University of Sussex, Falmer, Brighton BN1 9RQ, UK.
Janin BublitzDepartment of Human Genetics, Hannover Medical School, Hannover, Germany.
Jovel BogantesServicio de Cirugía Reconstructiva, Hospital Rafael Ángel Calderón Guardia, Caja Costarricense de Seguro Social, San José, Costa Rica.
Winfried HofmannDepartment of Human Genetics, Hannover Medical School, Hannover, Germany.
Alejandro LealSection of Genetics and Biotechnology, School of Biology, University of Costa Rica, San José, Costa Rica.
Hana HanzlikovaDepartment of Genome Dynamics, Institute of Molecular Genetics of the Czech Academy of Sciences, Prague 4, 142 20, Czech Republic.
Keith W CaldecottDepartment of Genome Dynamics, Institute of Molecular Genetics of the Czech Academy of Sciences, Prague 4, 142 20, Czech Republic.
University of Sussex · GBMedizinische Hochschule Hannover · DECosta Rican Department of Social Security · CRCzech Academy of Sciences, Institute of Molecular Genetics · CZUniversidad de Costa Rica · CR

Funding

Medical Research Council MR/P010121/1
6 · The paper itself

Abstract

Hereditary mutations in polynucleotide kinase-phosphatase (PNKP) result in a spectrum of neurological pathologies ranging from neurodevelopmental dysfunction in microcephaly with early onset seizures (MCSZ) to neurodegeneration in ataxia oculomotor apraxia-4 (AOA4) and Charcot-Marie-Tooth disease (CMT2B2). Consistent with this, PNKP is implicated in the repair of both DNA single-strand breaks (SSBs) and DNA double-strand breaks (DSBs); lesions that can trigger neurodegeneration and neurodevelopmental dysfunction, respectively. Surprisingly, however, we did not detect a significant defect in DSB repair (DSBR) in primary fibroblasts from PNKP patients spanning the spectrum of PNKP-mutated pathologies. In contrast, the rate of SSB repair (SSBR) is markedly reduced. Moreover, we show that the restoration of SSBR in patient fibroblasts collectively requires both the DNA kinase and DNA phosphatase activities of PNKP, and the fork-head associated (FHA) domain that interacts with the SSBR protein, XRCC1. Notably, however, the two enzymatic activities of PNKP appear to affect different aspects of disease pathology, with reduced DNA phosphatase activity correlating with neurodevelopmental dysfunction and reduced DNA kinase activity correlating with neurodegeneration. In summary, these data implicate reduced rates of SSBR, not DSBR, as the source of both neurodevelopmental and neurodegenerative pathology in PNKP-mutated disease, and the extent and nature of this reduction as the primary determinant of disease severity.

Indexed as

DNA Breaks, Double-StrandedDNA Breaks, Single-StrandedApraxiasCharcot-Marie-Tooth DiseaseDNA RepairDNA Repair EnzymesFibroblastsHumansMicrocephalyMutationPhosphotransferases (Alcohol Group Acceptor)SeizuresX-ray Repair Cross Complementing Protein 1DNA Repair EnzymesPhosphotransferases (Alcohol Group Acceptor)PNKP protein, humanX-ray Repair Cross Complementing Protein 1XRCC1 protein, human

Identifiers

PMID32504494
PMCPMC7337934
OpenAlexW3034091458

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.