Evidence map›Paper›PMID 32504259›Full record

ArticleNeuroinformatics2021

BVAR-Connect: A Variational Bayes Approach to Multi-Subject Vector Autoregressive Models for Inference on Brain Connectivity Networks.

Jeong Hwan Kook, Kelly A Vaughn, Dana M DeMaster, Linda Ewing-Cobbs, Marina Vannucci

Abstract read
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Article in Neuroinformatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Flexible Bayesian Product Mixture Models for Vector Autoregressions.Journal of machine learning research : JMLR · 2024
    Article
  3. Article
  4. Article
  5. Latent Network Estimation and Variable Selection for Compositional Data Via Variational EM.Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jeong Hwan KookDepartment of Statistics, Rice University, Houston, TX, 77005, USA.
Kelly A VaughnDepartment of Pediatrics, Children's Learning Institute, University of Texas Health Science Center, Houston, TX, 77030, USA.
Dana M DeMasterDepartment of Pediatrics, Children's Learning Institute, University of Texas Health Science Center, Houston, TX, 77030, USA.
Linda Ewing-CobbsDepartment of Pediatrics, Children's Learning Institute, University of Texas Health Science Center, Houston, TX, 77030, USA.
Marina VannucciDepartment of Statistics, Rice University, Houston, TX, 77005, USA. marina@rice.edu.ORCID 0000-0002-7360-5321

Funding

Tramatic Stress After Pediatric Injury: Neurobiological InfluencesR01NS046308 · NINDS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI EWING-COBBS, LINDA · 2004 to 2015
$6.0M
NINDS NIH HHS R01 NS046308
6 · The paper itself

Abstract

In this paper we propose BVAR-connect, a variational inference approach to a Bayesian multi-subject vector autoregressive (VAR) model for inference on effective brain connectivity based on resting-state functional MRI data. The modeling framework uses a Bayesian variable selection approach that flexibly integrates multi-modal data, in particular structural diffusion tensor imaging (DTI) data, into the prior construction. The variational inference approach we develop allows scalability of the methods and results in the ability to estimate subject- and group-level brain connectivity networks over whole-brain parcellations of the data. We provide a brief description of a user-friendly MATLAB GUI released for public use. We assess performance on simulated data, where we show that the proposed inference method can achieve comparable accuracy to the sampling-based Markov Chain Monte Carlo approach but at a much lower computational cost. We also address the case of subject groups with imbalanced sample sizes. Finally, we illustrate the methods on resting-state functional MRI and structural DTI data on children with a history of traumatic injury.

Indexed as

AlgorithmsBayes TheoremBrainBrain Injuries, TraumaticBrain MappingChildDiffusion Tensor ImagingHumansImage Interpretation, Computer-AssistedAutoregressive modelsBayesian hierarchical modelsMulti-Modal imagingResting-state fMRIVariable selectionVariational inference

Identifiers

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.