Evidence map›Paper›PMID 32503988›Full record

ArticleScientific data2020

HISTOBREAST, a collection of brightfield microscopy images of Haematoxylin and Eosin stained breast tissue.

Roxana M Buga, Tiberiu Totu, Adrian Dumitru, Mariana Costache, Iustin Floroiu, Nataša Sladoje, Stefan G Stanciu

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.8field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 9 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 4 countries.

Roxana M Buga *Center for Microscopy-Microanalysis and Information Processing, Politehnica University of Bucharest, Bucharest, Romania.
Tiberiu Totu *Center for Microscopy-Microanalysis and Information Processing, Politehnica University of Bucharest, Bucharest, Romania.
Adrian DumitruDepartment of Pathology, Carol Davila University of Medicine and Pharmacy, Bucharest, Romania.
Mariana CostacheDepartment of Pathology, Carol Davila University of Medicine and Pharmacy, Bucharest, Romania.
Iustin FloroiuCenter for Microscopy-Microanalysis and Information Processing, Politehnica University of Bucharest, Bucharest, Romania.
Nataša SladojeCentre for Image Analysis, Department of Information Technology, Uppsala University, Uppsala, Sweden.
Stefan G StanciuCenter for Microscopy-Microanalysis and Information Processing, Politehnica University of Bucharest, Bucharest, Romania. stefan.stanciu@cmmip-upb.org.
Universitatea Națională de Știință și Tehnologie Politehnica București · ROClinical Emergency Hospital Bucharest · ROMathematical Institute of the Serbian Academy of Sciences and Arts

Funding

European Cooperation in Science and Technology (COST) CA15124Ministarstvo Prosvete, Nauke i Tehnološkog Razvoja (Ministry of Education, Science and Technological Development of the Republic of Serbia) III44006Ministarstvo Prosvete, Nauke i Tehnološkog Razvoja (Ministry of Education, Science and Technological Development of the Republic of Serbia) ON174008Unitatea Executiva pentru Finantarea Invatamantului Superior, a Cercetarii, Dezvoltarii si Inovarii (Executive Agency for Higher Education, Scientific Research, Development and Innovation Funding) 39/2018 HAMELDENTUnitatea Executiva pentru Finantarea Invatamantului Superior, a Cercetarii, Dezvoltarii si Inovarii (Executive Agency for Higher Education, Scientific Research, Development and Innovation Funding) PN-III-P1-1.1-TE-2016-2147Unitatea Executiva pentru Finantarea Invatamantului Superior, a Cercetarii, Dezvoltarii si Inovarii (Executive Agency for Higher Education, Scientific Research, Development and Innovation Funding) PN-III-P2-2.1-PED-2016-1252VINNOVA (Swedish Governmental Agency for Innovation Systems) 2016-02329
6 · The paper itself

Abstract

Modern histopathology workflows rely on the digitization of histology slides. The quality of the resulting digital representations, in the form of histology slide image mosaics, depends on various specific acquisition conditions and on the image processing steps that underlie the generation of the final mosaic, e.g. registration and blending of the contained image tiles. We introduce HISTOBREAST, an extensive collection of brightfield microscopy images that we collected in a principled manner under different acquisition conditions on Haematoxylin - Eosin (H&E) stained breast tissue. HISTOBREAST is comprised of neighbour image tiles and ensemble of mosaics composed from different combinations of the available image tiles, exhibiting progressively degraded quality levels. HISTOBREAST can be used to benchmark image processing and computer vision techniques with respect to their robustness to image modifications specific to brightfield microscopy of H&E stained tissues. Furthermore, HISTOBREAST can serve in the development of new image processing methods, with the purpose of ensuring robustness to typical image artefacts that raise interpretation problems for expert histopathologists and affect the results of computerized image analysis.

Indexed as

BreastEosine Yellowish-(YS)FemaleHematoxylinHumansImage Processing, Computer-AssistedMicroscopySoftwareEosine Yellowish-(YS)Hematoxylin

Identifiers

PMID32503988
PMCPMC7275059
OpenAlexW3033031588

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.