Evidence map›Paper›PMID 32502205›Full record

ArticlePLoS computational biology2020

Two-variable nullcline analysis of ionic general equilibrium predicts calcium homeostasis in ventricular myocytes.

David Conesa, Blas Echebarria, Angelina Peñaranda, Inmaculada R Cantalapiedra, Yohannes Shiferaw, Enrique Alvarez-Lacalle

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

David ConesaDepartament de Física. Universitat Politècnica de Catalunya-BarcelonaTech, Barcelona. Spain.ORCID 0000-0001-5917-2673
Blas EchebarriaDepartament de Física. Universitat Politècnica de Catalunya-BarcelonaTech, Barcelona. Spain.ORCID 0000-0003-0503-1781
Angelina PeñarandaDepartament de Física. Universitat Politècnica de Catalunya-BarcelonaTech, Barcelona. Spain.ORCID 0000-0002-0162-2851
Inmaculada R CantalapiedraDepartament de Física. Universitat Politècnica de Catalunya-BarcelonaTech, Barcelona. Spain.ORCID 0000-0002-0070-8979
Yohannes ShiferawPhysics Department. California State University Northridge, Los Angeles, California, United States of America.
Enrique Alvarez-LacalleDepartament de Física. Universitat Politècnica de Catalunya-BarcelonaTech, Barcelona. Spain.ORCID 0000-0001-6824-6857
Universitat Politècnica de Catalunya · ESCalifornia State University, Northridge · US

Funding

KITP Interdisciplinary Biology InitiativeR25GM067110 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI SHRAIMAN, BORIS I · 2003 to 2018
$1.8M
NIGMS NIH HHS R25 GM067110
6 · The paper itself

Abstract

Ventricular contraction is roughly proportional to the amount of calcium released from the Sarcoplasmic Reticulum (SR) during systole. While it is rather straightforward to measure calcium levels and contractibility under different physiological conditions, the complexity of calcium handling during systole and diastole has made the prediction of its release at steady state impossible. Here we approach the problem analyzing the evolution of intracellular and extracellular calcium fluxes during a single beat which is away from homeostatic balance. Using an in-silico subcellular model of rabbit ventricular myocyte, we show that the high dimensional nonlinear problem of finding the steady state can be reduced to a two-variable general equilibrium condition where pre-systolic calcium level in the cytosol and in the SR must fulfill simultaneously two different equalities. This renders calcium homeostasis as a problem that can be studied in terms of its equilibrium structure, leading to precise predictions of steady state from single-beat measurements. We show how changes in ion channels modify the general equilibrium, as shocks would do in general equilibrium macroeconomic models. This allows us to predict when an enhanced entrance of calcium in the cell reduces its contractibility and explain why SERCA gene therapy, a change in calcium handling to treat heart failure, might fail to improve contraction even when it successfully increases SERCA expression.

Indexed as

IonsAnimalsCalciumComputer SimulationCytosolHeart VentriclesHomeostasisMuscle CellsMyocardial ContractionMyocytes, CardiacRabbitsRyanodine Receptor Calcium Release ChannelSarcoplasmic ReticulumSarcoplasmic Reticulum Calcium-Transporting ATPasesSystoleCalciumIonsRyanodine Receptor Calcium Release ChannelSarcoplasmic Reticulum Calcium-Transporting ATPases

Identifiers

PMID32502205
PMCPMC7316341
OpenAlexW3033391098

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.