Evidence map›Paper›PMID 32501836›Full record

ArticleAIDS (London, England)2020

HIV-1 induced changes in HLA-C*03 :  04-presented peptide repertoires lead to reduced engagement of inhibitory natural killer cell receptors.

Maja C Ziegler, Annika Nelde, Jeffrey K Weber, Christian M Schreitmüller, Glòria Martrus, Tien Huynh, Madeleine J Bunders, Sebastian Lunemann, Stefan Stevanovic, Ruhong Zhou and 1 more

Open access · hybridAbstract read
In one paragraph

Article in AIDS (London, England), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Maja C ZieglerHeinrich Pette Institute, Leibniz Institute for Experimental Virology, Hamburg.
Annika NeldeInstitute for Cell Biology, Department of Immunology, University of Tübingen, Tübingen, Germany.
Jeffrey K WeberComputational Biology Center IBM Thomas J. Watson Research Center, Yorktown Heights, New York, USA.
Christian M SchreitmüllerInstitute for Cell Biology, Department of Immunology, University of Tübingen, Tübingen, Germany.
Glòria MartrusHeinrich Pette Institute, Leibniz Institute for Experimental Virology, Hamburg.
Tien HuynhComputational Biology Center IBM Thomas J. Watson Research Center, Yorktown Heights, New York, USA.
Madeleine J BundersHeinrich Pette Institute, Leibniz Institute for Experimental Virology, Hamburg.
Sebastian LunemannHeinrich Pette Institute, Leibniz Institute for Experimental Virology, Hamburg.
Stefan StevanovicInstitute for Cell Biology, Department of Immunology, University of Tübingen, Tübingen, Germany.
Ruhong ZhouComputational Biology Center IBM Thomas J. Watson Research Center, Yorktown Heights, New York, USA.
Marcus AltfeldHeinrich Pette Institute, Leibniz Institute for Experimental Virology, Hamburg.
Leibniz Institute of Virology (LIV) · DEUniversity of Tübingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveViral infections influence intracellular peptide repertoires available for presentation by HLA-I. Alterations in HLA-I/peptide complexes can modulate binding of killer immunoglobuline-like receptors (KIRs) and thereby the function of natural killer (NK) cells. Although multiple studies have provided evidence that HLA-I/KIR interactions play a role in HIV-1 disease progression, the consequence of HIV-1 infection for HLA-I/KIR interactions remain largely unknown.

designWe determined changes in HLA-I presented peptides resulting from HIV-1-infection of primary human CD4 T cells and assessed the impact of changes in peptide repertoires on HLA-I/KIR interactions.

methodsLiquid chromatography-coupled tandem mass spectrometry to identify HLA-I presented peptides, cell-based in-vitro assays to evaluate functional consequences of alterations in immunopeptidome and atomistic molecular dynamics simulations to confirm experimental data.

resultsA total of 583 peptides exclusively presented on HIV-1-infected cells were identified, of which only 0.2% represented HIV-1 derived peptides. Focusing on HLA-C*03 : 04/KIR2DL3 interactions, we observed that HLA-C*03 : 04-presented peptides derived from noninfected CD4 T cells mediated stronger binding of inhibitory KIR2DL3 than peptides derived from HIV-1-infected cells. Furthermore, the most abundant peptide presented by HLA-C*03 : 04 on noninfected CD4 T cells (VIYPARISL) mediated the strongest KIR2DL3-binding, while the most abundant peptide presented on HIV-1-infected cells (YAIQATETL) did not mediate KIR2DL3-binding. Molecular dynamics simulations of HLA-C*03 : 04/KIR2DL3 interactions in the context of these two peptides revealed that VIYPARISL significantly enhanced the HLA-C*03 : 04/peptide contact area to KIR2DL3 compared with YAIQATETL.

conclusionThese data demonstrate that HIV-1 infection-induced changes in HLA-I-presented peptides can reduce engagement of inhibitory KIRs, providing a mechanism for enhanced activation of NK cells by virus-infected cells.

Indexed as

HIV-1HIV InfectionsHLA-C AntigensHumansPeptidesReceptors, KIRReceptors, Natural Killer CellHLA-C AntigensPeptidesReceptors, KIRReceptors, Natural Killer Cell

Identifiers

PMID32501836
PMCPMC8635260
OpenAlexW3034068481

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.