Evidence map›Paper›PMID 32500291›Full record

ArticleLasers in medical science2021

Biochemical characterization of pathogenic bacterial species using Raman spectroscopy and discrimination model based on selected spectral features.

Fernanda SantAna de Siqueira E Oliveira, Adriano Moraes da Silva, Marcos Tadeu Tavares Pacheco, Hector Enrique Giana, Landulfo Silveira

Abstract read
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In one paragraph

Article in Lasers in medical science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 60 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Fernanda SantAna de Siqueira E OliveiraInstituto de Ciências da Saúde, Universidade Paulista - UNIP, Rod. Pres. Dutra, km 157, São José dos Campos, SP, 12240-420, Brazil.
Adriano Moraes da SilvaInstituto de Ciências da Saúde, Universidade Paulista - UNIP, Rod. Pres. Dutra, km 157, São José dos Campos, SP, 12240-420, Brazil.
Marcos Tadeu Tavares PachecoCenter for Innovation, Technology and Education - CITE, Universidade Anhembi Morumbi - UAM, Parque Tecnológico de São José dos Campos, Estr. Dr. Altino Bondensan 500, São José dos Campos, SP, 12247-016, Brazil.
Hector Enrique GianaLaboratório Oswaldo Cruz, Pça Candida Maria Cesar Sawaya Giana 128, São José dos Campos, SP, 12243-003, Brazil.
Landulfo SilveiraCenter for Innovation, Technology and Education - CITE, Universidade Anhembi Morumbi - UAM, Parque Tecnológico de São José dos Campos, Estr. Dr. Altino Bondensan 500, São José dos Campos, SP, 12247-016, Brazil. lsjunior@anhembi.br.ORCID http://orcid.org/0000-0002-6616-3334
Anhembi Morumbi University · BRUniversidade Paulista · BRFaculdades Oswaldo Cruz · BR

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 305680/2014-5Fundação de Amparo à Pesquisa do Estado de São Paulo 2009/01788-5
6 · The paper itself

Abstract

This study aimed to evaluate the differences in the Raman spectra of nine clinical species of bacteria isolated from infections (three Gram-positive and six Gram-negative species), correlating the spectra with the chemical composition of each species and to develop a classification model through discriminant analysis to categorize each bacterial strain using the peaks with the most significant differences. Bacteria were cultured in Mueller Hinton agar and a sample of biomass was harvested and placed in an aluminum sample holder. A total of 475 spectra from 115 different strains were obtained through a dispersive Raman spectrometer (830 nm) with exposure time of 50 s. The intensities of the peaks were evaluated by one-way analysis of variance (ANOVA) and the peaks with significant differences were related to the differences in the biochemical composition of the strains. Discriminant analysis based on quadratic distance applied to the peaks with the most significant differences and partial least squares applied to the whole spectrum showed 89.5% and 90.1% of global accuracy, respectively, for classification of the spectra in all the groups. Raman spectroscopy could be a promising technique to identify spectral differences related to the biochemical content of pathogenic microorganisms and to provide a faster diagnosis of infectious diseases.

Indexed as

Discriminant AnalysisModels, BiologicalSpectrum Analysis, RamanBacteriaHumansLeast-Squares AnalysisVibrationAnalysis of variance (ANOVA)Bacteria chemistryDiscriminant analysisPartial least squaresRaman spectroscopy

Identifiers

PMID32500291
OpenAlexW3032972414

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.