Evidence map›Paper›PMID 32499479›Full record

ArticleNature communications2020

Human aminolevulinate synthase structure reveals a eukaryotic-specific autoinhibitory loop regulating substrate binding and product release.

Henry J Bailey, Gustavo A Bezerra, Jason R Marcero, Siladitya Padhi, William R Foster, Elzbieta Rembeza, Arijit Roy, David F Bishop, Robert J Desnick, Gopalakrishnan Bulusu and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. A reversible feedback mechanism regulating mitochondrial heme synthesis.bioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. A novel and apparentFrontiers in pediatrics · 2024
    Article
  13. Article
  14. The yeast ALA synthase C-terminus positively controls enzyme structure and function.Protein science : a publication of the Protein Society · 2023
    Article
  15. New Avenues of Heme Synthesis Regulation.International journal of molecular sciences · 2022
    Review
  16. Article
  17. Review
  18. Regulation of Heme Synthesis by Mitochondrial Homeostasis Proteins.Frontiers in cell and developmental biology · 2022
    Review
  19. Review
  20. Structural Basis for Allostery in PLP-dependent Enzymes.Frontiers in molecular biosciences · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Henry J Bailey *Structural Genomics Consortium, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7DQ, UK.
Gustavo A Bezerra *Structural Genomics Consortium, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7DQ, UK.
Jason R Marcero *Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, 30602, USA.
Siladitya Padhi *TCS Innovation Labs-Hyderabad (Life Sciences Division), Tata Consultancy Services Ltd, Hyderabad, 500081, India.ORCID http://orcid.org/0000-0002-4272-6040
William R FosterStructural Genomics Consortium, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7DQ, UK.ORCID http://orcid.org/0000-0003-1065-510X
Elzbieta RembezaStructural Genomics Consortium, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7DQ, UK.
Arijit RoyTCS Innovation Labs-Hyderabad (Life Sciences Division), Tata Consultancy Services Ltd, Hyderabad, 500081, India.ORCID http://orcid.org/0000-0002-1961-2483
David F BishopDepartment of Genetics and Genomics Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Robert J DesnickDepartment of Genetics and Genomics Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Gopalakrishnan BulusuTCS Innovation Labs-Hyderabad (Life Sciences Division), Tata Consultancy Services Ltd, Hyderabad, 500081, India.ORCID http://orcid.org/0000-0002-4958-7573
Harry A DaileyDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, 30602, USA.
Wyatt W YueStructural Genomics Consortium, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7DQ, UK. wyatt.yue@sgc.ox.ac.uk.ORCID http://orcid.org/0000-0001-6959-6007
University of Oxford · GBTata Consultancy Services (India) · INIcahn School of Medicine at Mount Sinai · USUniversity of Georgia · US

Funding

Wellcome TrustWellcome Trust 092809/Z/10/Z
6 · The paper itself

Abstract

5'-aminolevulinate synthase (ALAS) catalyzes the first step in heme biosynthesis, generating 5'-aminolevulinate from glycine and succinyl-CoA. Inherited frameshift indel mutations of human erythroid-specific isozyme ALAS2, within a C-terminal (Ct) extension of its catalytic core that is only present in higher eukaryotes, lead to gain-of-function X-linked protoporphyria (XLP). Here, we report the human ALAS2 crystal structure, revealing that its Ct-extension folds onto the catalytic core, sits atop the active site, and precludes binding of substrate succinyl-CoA. The Ct-extension is therefore an autoinhibitory element that must re-orient during catalysis, as supported by molecular dynamics simulations. Our data explain how Ct deletions in XLP alleviate autoinhibition and increase enzyme activity. Crystallography-based fragment screening reveals a binding hotspot around the Ct-extension, where fragments interfere with the Ct conformational dynamics and inhibit ALAS2 activity. These fragments represent a starting point to develop ALAS2 inhibitors as substrate reduction therapy for porphyria disorders that accumulate toxic heme intermediates.

Indexed as

Gene Expression Regulation, Enzymologic5-Aminolevulinate SynthetaseAcyl Coenzyme ACatalysisCatalytic DomainCrystallography, X-RayGenetic Diseases, X-LinkedHemeHumansKineticsMolecular Dynamics SimulationProtein BindingProtein ConformationProtein DomainsProtoporphyria, ErythropoieticSubstrate Specificity5-Aminolevulinate SynthetaseAcyl Coenzyme AALAS2 protein, humanHemesuccinyl-coenzyme A

Identifiers

PMID32499479
PMCPMC7272653
OpenAlexW3033960814

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.