Evidence map›Paper›PMID 32499222›Full record

ArticleG3 (Bethesda, Md.)2020

Bayesian and Machine Learning Models for Genomic Prediction of Anterior Cruciate Ligament Rupture in the Canine Model.

Lauren A Baker, Mehdi Momen, Kore Chan, Nathan Bollig, Fernando Brito Lopes, Guilherme J M Rosa, Rory J Todhunter, Emily E Binversie, Susannah J Sample, Peter Muir

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Lauren A BakerDepartment of Surgical Sciences, School of Veterinary Medicine.ORCID 0000-0002-4836-7720
Mehdi MomenDepartment of Surgical Sciences, School of Veterinary Medicine.ORCID 0000-0002-2562-2741
Kore ChanDepartment of Surgical Sciences, School of Veterinary Medicine.ORCID 0000-0002-8762-7855
Nathan BolligDepartment of Surgical Sciences, School of Veterinary Medicine.ORCID 0000-0002-0393-6395
Fernando Brito LopesDepartment of Animal Sciences, University of Wisconsin-Madison, WI, 53706, and.ORCID 0000-0003-1292-3331
Guilherme J M RosaDepartment of Animal Sciences, University of Wisconsin-Madison, WI, 53706, and.ORCID 0000-0001-9172-6461
Rory J TodhunterDepartment of Clinical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, New York, 14853.ORCID 0000-0001-2345-6789
Emily E BinversieDepartment of Surgical Sciences, School of Veterinary Medicine.ORCID 0000-0003-1991-0867
Susannah J SampleDepartment of Surgical Sciences, School of Veterinary Medicine.ORCID 0000-0001-8551-7460
Peter MuirDepartment of Surgical Sciences, School of Veterinary Medicine, peter.muir@wisc.edu.ORCID 0000-0003-0028-6005
University of Wisconsin–Madison · USNew York State College of Veterinary Medicine · US

Funding

Research Training for Computation and Informatics in Biology and MedicineT15LM007359 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI Mark W. Craven, Colin Noel Dewey · 2002 to 2026
$22.6M
Comparative Biomedical Sciences Training ProgramT32OD010423 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI Marulasiddappa Suresh · 2012 to 2026
$5.0M
Short-Term Research Training of Veterinary Students in WisconsinT35OD011078 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI BJORLING, DALE EDMOND, JORGENSEN, JOAN S · 2012 to 2025
$1.0M
Genotypic and neuropathologic dissection of acquired periperal neuropathy in a canine modelK01OD019743 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI SAMPLE, SUSANNAH · 2015 to 2019
$722k
NIH HHS K01 OD019743NIH HHS T32 OD010423NIH HHS T35 OD011078NLM NIH HHS T15 LM007359
6 · The paper itself

Abstract

Anterior cruciate ligament (ACL) rupture is a common, debilitating condition that leads to early-onset osteoarthritis and reduced quality of human life. ACL rupture is a complex disease with both genetic and environmental risk factors. Characterizing the genetic basis of ACL rupture would provide the ability to identify individuals that have high genetic risk and allow the opportunity for preventative management. Spontaneous ACL rupture is also common in dogs and shows a similar clinical presentation and progression. Thus, the dog has emerged as an excellent genomic model for human ACL rupture. Genome-wide association studies (GWAS) in the dog have identified a number of candidate genetic variants, but research in genomic prediction has been limited. In this analysis, we explore several Bayesian and machine learning models for genomic prediction of ACL rupture in the Labrador Retriever dog. Our work demonstrates the feasibility of predicting ACL rupture from SNPs in the Labrador Retriever model with and without consideration of non-genetic risk factors. Genomic prediction including non-genetic risk factors approached clinical relevance using multiple linear Bayesian and non-linear models. This analysis represents the first steps toward development of a predictive algorithm for ACL rupture in the Labrador Retriever model. Future work may extend this algorithm to other high-risk breeds of dog. The ability to accurately predict individual dogs at high risk for ACL rupture would identify candidates for clinical trials that would benefit both veterinary and human medicine.

Indexed as

Anterior Cruciate LigamentAnterior Cruciate Ligament InjuriesAnimalsBayes TheoremDogsGenome-Wide Association StudyGenomicsMachine LearningACL ruptureCanineDog modelGenomic predictionGenPredShared data resources

Identifiers

PMID32499222
PMCPMC7407450
OpenAlexW3033343774

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.