Evidence map›Paper›PMID 32496192›Full record

ArticleeLife2020

The His-Gly motif of acid-sensing ion channels resides in a reentrant 'loop' implicated in gating and ion selectivity.

Nate Yoder, Eric Gouaux

Abstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Conformational plasticity of human acid-sensing ion channel 1a.Nature structural & molecular biology · 2026
    Article
  3. Review
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  10. Review
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  14. Article
  15. Proline substitutions in the ASIC1 β11-12 linker slow desensitization.bioRxiv : the preprint server for biology · 2024
    Article
  16. Structural basis for excitatory neuropeptide signaling.Nature structural & molecular biology · 2024
    Article
  17. Epithelial NaComprehensive Physiology · 2024
    Review
  18. Purification of Potassium Ion Channels Using Styrene-Maleic Acid Copolymers.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  19. Article
  20. Photomodulation of the ASIC1a acidic pocket destabilizes the open state.Protein science : a publication of the Protein Society · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Nate YoderVollum Institute, Oregon Health & Science University, Portland, United States.ORCID 0000-0002-9017-0673
Eric GouauxVollum Institute, Oregon Health & Science University, Portland, United States.ORCID 0000-0002-8549-2360

Funding

Pacific Northwest Center for Cryo-EM - Screening supplementU24GM129547 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI EVANS, JAMES E, GOUAUX, JAMES E · 2018 to 2023
$54.8M
NCCAT: National Center for CryoEM Access and Training- Supplement for Windows 10 and FFIU24GM129539 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2018 to 2023
$53.9M
MULTIDISCIPLINARY TRAINING IN NEUROENDOCRINOLOGYT32DK007680 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI GOODMAN, RICHARD H. · 1991 to 2015
$6.8M
3D STRUCTURE/FUNCTION OF LIGAND GATED ION CHANNELSR01NS038631 · NINDS · OREGON HEALTH & SCIENCE UNIVERSITY · PI GOUAUX, JAMES E · 1999 to 2024
$6.7M
Structure of an acid sensing ion channel in a resting state at high pH.F31NS096782 · NINDS · OREGON HEALTH & SCIENCE UNIVERSITY · PI YODER, NATHAN · 2016 to 2018
$132k
Howard Hughes Medical InstituteNIDDK NIH HHS 5T32DK007680NIDDK NIH HHS T32 DK007680NIGMS NIH HHS U24 GM129539NIGMS NIH HHS U24 GM129547NIH HHS U24GM129539NIH HHS U24GM129547NINDS NIH HHS 5F31NS096782NINDS NIH HHS 5R01NS038631NINDS NIH HHS F31 NS096782NINDS NIH HHS R01 NS038631
6 · The paper itself

Abstract

Acid-sensing ion channels (ASICs) are proton-gated members of the epithelial sodium channel/degenerin (ENaC/DEG) superfamily of ion channels and are expressed throughout the central and peripheral nervous systems. The homotrimeric splice variant ASIC1a has been implicated in nociception, fear memory, mood disorders and ischemia. Here, we extract full-length chicken ASIC1 (cASIC1) from cell membranes using styrene maleic acid (SMA) copolymer, elucidating structures of ASIC1 channels in both high pH resting and low pH desensitized conformations by single-particle cryo-electron microscopy (cryo-EM). The structures of resting and desensitized channels reveal a reentrant loop at the amino terminus of ASIC1 that includes the highly conserved 'His-Gly' (HG) motif. The reentrant loop lines the lower ion permeation pathway and buttresses the 'Gly-Ala-Ser' (GAS) constriction, thus providing a structural explanation for the role of the His-Gly dipeptide in the structure and function of ASICs.

Indexed as

Acid Sensing Ion ChannelsAmino Acid MotifsAnimalsCell MembraneChickensCryoelectron MicroscopyCrystallography, X-RayGlycineHistidineHydrogen-Ion ConcentrationIon TransportMaleatesProtein ConformationAcid Sensing Ion ChannelsGlycineHistidineMaleatesmaleic acidacid-sensing ion channelASICchickenENaCepithelial sodium channelligand-gated ion channelmolecular biophysicsneuroscienceproton-gated ion channelstructural biology

Identifiers

PMID32496192
PMCPMC7308080

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.