Evidence map›Paper›PMID 32494956›Full record

ArticleEuropean journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology2020

Fifteen years of a nationwide culture collection of Neisseria gonorrhoeae antimicrobial resistance in Portugal.

Miguel Pinto, João Carlos Rodrigues, Rui Matias, Ivone Água-Doce, Dora Cordeiro, Cristina Correia, João Paulo Gomes, Maria José Borrego, PTGonoNet

Abstract read
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In one paragraph

Article in European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 2 pooled it
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 2 syntheses or guidelines pooled it, 9 citations in OpenAlex.

  1. Pooled it
  2. Global status of Azithromycin and Erythromycin Resistance Rates inThe Yale journal of biology and medicine · 2022
    Pooled it
  3. Review
  4. Microbial genomics · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Miguel PintoBioinformatics Unit, Department of Infectious Diseases, Instituto Nacional de Saúde Doutor Ricardo Jorge, INSA, Avenida Padre Cruz, 1649-016, Lisbon, Portugal.
João Carlos RodriguesLaboratory of Microbiology, Department of Infectious Diseases, Instituto Nacional de Saúde Doutor Ricardo Jorge, INSA, Avenida Padre Cruz, 1649-016, Lisbon, Portugal.
Rui MatiasLaboratory of Microbiology, Department of Infectious Diseases, Instituto Nacional de Saúde Doutor Ricardo Jorge, INSA, Avenida Padre Cruz, 1649-016, Lisbon, Portugal.
Ivone Água-DoceLaboratory of Microbiology, Department of Infectious Diseases, Instituto Nacional de Saúde Doutor Ricardo Jorge, INSA, Avenida Padre Cruz, 1649-016, Lisbon, Portugal.
Dora CordeiroNational Reference Laboratory for Sexually Transmitted Infections, Department of Infectious Diseases, National Institute of Health, Avenida Padre Cruz, 1649-016, Lisbon, Portugal.
Cristina CorreiaNational Reference Laboratory for Sexually Transmitted Infections, Department of Infectious Diseases, National Institute of Health, Avenida Padre Cruz, 1649-016, Lisbon, Portugal.
João Paulo GomesBioinformatics Unit, Department of Infectious Diseases, Instituto Nacional de Saúde Doutor Ricardo Jorge, INSA, Avenida Padre Cruz, 1649-016, Lisbon, Portugal.
Maria José BorregoNational Reference Laboratory for Sexually Transmitted Infections, Department of Infectious Diseases, National Institute of Health, Avenida Padre Cruz, 1649-016, Lisbon, Portugal. m.jose.borrego@insa.min-saude.pt.
PTGonoNet
National Institute of Health Dr. Ricardo Jorge · PT

Funding

Fundação para a Ciência e a Tecnologia SFRH/BD/109264/2015
6 · The paper itself

Abstract

Neisseria gonorrhoeae antimicrobial resistance (AMR) and gonorrhea disease burden remain major public health concerns worldwide. To contribute to the supranational demands to monitor and manage the spread of antimicrobial-resistant N. gonorrhoeae, the Portuguese NIH promoted the creation of the National Laboratory Network for Neisseria gonorrhoeae Collection (PTGonoNet). The present study reports the N. gonorrhoeae major AMR trends observed from 2003 up to 2018. All isolates described in the present study constitute the opportunistic ongoing N. gonorrhoeae isolate collection supported by the National Reference Laboratory for Sexually Transmitted Infections of the Portuguese NIH, enrolling strains isolated in 35 different public and private laboratories. Minimum inhibitory concentrations were determined using E-tests for azithromycin, benzylpenicillin, cefixime, ceftriaxone, ciprofloxacin, gentamicin, spectinomycin and tetracycline. Molecular typing was determined using NG-MAST. AMR data of 2596 country-spread isolates show that 87.67% of all N. gonorrhoeae isolates presented decreased susceptibility to at least one antimicrobial. A continuous decreased susceptibility and resistance to penicillin, tetracycline and ciprofloxacin can be observed along the years. However, no decreased susceptibility to cephalosporins was observed until 2018, while for azithromycin, this was always low. The most common observed NG-MAST genogroups were G1407, G7445, G225, G2, and G1034. This study evidences the advantages of a nationwide collection of isolates and of centralized AMR testing to respond to supranational (EURO-GASP) requirements while providing unprecedented data on AMR in the context of 15 years of surveillance.

Indexed as

AdolescentAdultAnti-Bacterial AgentsChildDemographyDrug Resistance, BacterialFemaleGonorrheaHumansMaleMicrobial Sensitivity TestsMiddle AgedMolecular EpidemiologyNeisseria gonorrhoeaePortugalSpecimen HandlingAnti-Bacterial AgentsAntimicrobial resistanceCollectionNeisseria gonorrhoeaeSexually transmitted infectionSurveillance

Identifiers

PMID32494956
OpenAlexW3031244041

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.