Evidence map›Paper›PMID 32493780›Full record

ArticleJournal of clinical microbiology2020

Accuracy of Xpert Ultra in Diagnosis of Pulmonary Tuberculosis among Children in Uganda: a Substudy from the SHINE Trial.

Willy Ssengooba, Jean de Dieu Iragena, Lydia Nakiyingi, Serestine Mujumbi, Eric Wobudeya, Robert Mboizi, David Boulware, David B Meya, Louise Choo, Angela M Crook and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 6 pooled it
0.6field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 6 syntheses or guidelines pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Evaluating the efficacy of stool sample on Xpert MTB/RIF Ultra and its comparison with other sample types by meta-analysis for TB diagnostics.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2022
    Pooled it
  6. Diagnostic accuracy of Xpert ultra for childhood tuberculosis: A preliminary systematic review and meta-analysis.Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology · 2022
    Pooled it
  7. Ultrasononography in Managing Extrapulmonary Tuberculosis: A Randomized, Controlled, Parallel, Superiority, Open-Label Trial.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2023
    Trial
  8. Article
  9. The microbiological diagnosis of pediatric tuberculosis: focus on the Ultra test.Jornal brasileiro de pneumologia : publicacao oficial da Sociedade Brasileira de Pneumologia e Tisilogia · 2026
    Article
  10. Article
  11. Diagnostic contribution of GeneXpert Ultra in pediatric pulmonary tuberculosis.Jornal brasileiro de pneumologia : publicacao oficial da Sociedade Brasileira de Pneumologia e Tisilogia · 2025
    Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Diagnosis of paediatric TB using XpertThe international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease · 2022
    Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 4 countries.

Willy SsengoobaMakerere University, Department of Medical Microbiology, Mycobacteriology (BSL-3) Laboratory, Kampala, Uganda Willyssengooba@gmail.com.ORCID 0000-0002-1643-110X
Jean de Dieu IragenaCommunicable Diseases Cluster, HIV/TB and Hepatitis Programme, World Health Organization Regional Office for Africa, Brazzaville, Congo.
Lydia NakiyingiInfectious Diseases Institute, College of Health Sciences Makerere University, Kampala, Uganda.
Serestine MujumbiMakerere University, Department of Medical Microbiology, Mycobacteriology (BSL-3) Laboratory, Kampala, Uganda.
Eric WobudeyaMakerere University-Johns Hopkins University Research Collaboration, Kampala, Uganda.
Robert MboiziMakerere University-Johns Hopkins University Research Collaboration, Kampala, Uganda.
David BoulwareInfectious Diseases Institute, College of Health Sciences Makerere University, Kampala, Uganda.
David B MeyaInfectious Diseases Institute, College of Health Sciences Makerere University, Kampala, Uganda.
Louise ChooMRC Clinical Trials Unit, University College London, London, United Kingdom.
Angela M CrookMRC Clinical Trials Unit, University College London, London, United Kingdom.
Kristen LebeauMRC Clinical Trials Unit, University College London, London, United Kingdom.
Moses JolobaMakerere University, Department of Medical Microbiology, Mycobacteriology (BSL-3) Laboratory, Kampala, Uganda.
Anne-Marie DemersDesmond Tutu Tuberculosis Centre, Department of Paediatrics and Child Health, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa.
Fiona V CresswellMakerere University-Johns Hopkins University Research Collaboration, Kampala, Uganda.
Diana M GibbMRC Clinical Trials Unit, University College London, London, United Kingdom.
MRC Clinical Trials Unit at UCL · GBInfectious Diseases Institute · UGMakerere University · UGMUJHU Research Collaboration · UGDesmond Tutu HIV Foundation · ZALondon School of Hygiene & Tropical Medicine · GBWorld Health Organization Regional Office for Africa · CG

Funding

NURTURE:Research Training and Mentoring Program for Career Development of Faculty at Makerere University College of Health SciencesD43TW010132 · FIC · MAKERERE UNIVERSITY COLLEGE OF HEALTH SCIENCES · PI SEWANKAMBO, NELSON K · 2015 to 2019
$4.3M
Department of HealthFIC NIH HHS D43 TW010132Medical Research Council MC_UU_12023/26Medical Research Council MC_UU_12023/27Medical Research Council MR/L004445/1Wellcome Trust
6 · The paper itself

Abstract

Childhood tuberculosis (TB) presents significant diagnostic challenges associated with paucibacillary disease and requires a more sensitive test. We evaluated the diagnostic accuracy of Xpert MTB/RIF Ultra (Ultra) compared to other microbiological tests using respiratory samples from Ugandan children in the SHINE trial. SHINE is a randomized trial evaluating shorter treatment in 1,204 children with minimal TB disease in Africa and India. Among 352 samples and one cervical lymph node fine needle aspirate, one sample was randomly selected per patient and tested with the Xpert MTB/RIF assay (Xpert) and with Lowenstein-Jensen medium (LJ) and liquid mycobacterial growth indicator tube (MGIT) cultures. We selected only uncontaminated stored sample pellets for Ultra testing. We estimated the sensitivity of Xpert and Ultra against culture and a composite microbiological reference standard (any positive result). Of 398 children, 353 (89%) had culture, Xpert, and Ultra results. The median age was 2.8 years (interquartile range [IQR], 1.3 to 5.3); 8.5% (30/353) were HIV infected, and 54.4% (192/353) were male. Of the 353, 31 (9%) were positive by LJ and/or MGIT culture, 36 (10%) by Ultra, and 16 (5%) by Xpert. Sensitivities (95% confidence intervals [CI]) were 58% (39 to 65% [18/31]) for Ultra and 45% (27 to 64% [14/31]) for Xpert against any culture-positive result, with false positives of <1% and 5.5% for Xpert and Ultra. Against a composite microbiological reference, sensitivities were 72% (58 to 84% [36/50]) for Ultra and 32% (20 to 47% [16/50]) for Xpert. However, there were 17 samples that were positive only with Ultra (majority trace). Among children screened for minimal TB in Uganda, Ultra has higher sensitivity than Xpert. This represents an important advance for a condition which has posed a diagnostic challenge for decades.

Indexed as

Mycobacterium tuberculosisTuberculosis, PulmonaryChildChild, PreschoolFemaleHumansIndiaMaleSensitivity and SpecificitySputumUgandaaccuracychildhooddiagnosistuberculosisXpert Ultra

Identifiers

PMID32493780
PMCPMC7448651
OpenAlexW3030570217

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.