Evidence map›Paper›PMID 32493705›Full record

ArticleCancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology2020

Novel Variants of

Yu Chen Zhao, Dongfang Tang, Sen Yang, Hongliang Liu, Sheng Luo, Thomas E Stinchcombe, Carolyn Glass, Li Su, Sipeng Shen, David C Christiani and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Yu Chen ZhaoDuke Cancer Institute, Duke University Medical Center, Durham, North Carolina.
Dongfang TangDuke Cancer Institute, Duke University Medical Center, Durham, North Carolina.
Sen YangDuke Cancer Institute, Duke University Medical Center, Durham, North Carolina.
Hongliang LiuDuke Cancer Institute, Duke University Medical Center, Durham, North Carolina.
Sheng LuoDepartment of Biostatistics and Bioinformatics, Duke University School of Medicine, Durham, North Carolina.
Thomas E StinchcombeDuke Cancer Institute, Duke University Medical Center, Durham, North Carolina.
Carolyn GlassDuke Cancer Institute, Duke University Medical Center, Durham, North Carolina.ORCID 0000-0002-8850-9906
Li SuDepartment of Environmental Health and Department of Epidemiology, Harvard School of Public Health, Boston, Massachusetts.ORCID 0000-0002-6453-199X
Sipeng ShenDepartment of Environmental Health and Department of Epidemiology, Harvard School of Public Health, Boston, Massachusetts.
David C ChristianiDepartment of Environmental Health and Department of Epidemiology, Harvard School of Public Health, Boston, Massachusetts.ORCID 0000-0002-0301-0242
Qingyi WeiDuke Cancer Institute, Duke University Medical Center, Durham, North Carolina. qingyi.wei@duke.edu.ORCID 0000-0002-3845-9445
Duke University · USMassachusetts Department of Public Health · USDuke Medical Center · US

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI JOHN N. NORTON · 1985 to 2026
$174.8M
JH/CIDR Genotyping for Genome-Wide Association StudiesU01HG004438 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2007 to 2011
$24.2M
The Boston Lung Cancer Survival CohortU01CA209414 · NCI · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI David C Christiani · 2017 to 2026
$12.2M
Translational studies of Hsp90 inhibitors in NSCLCP50CA090578 · NCI · DANA-FARBER CANCER INST · PI YEAP, BEOW Y · 2008 to 2012
$11.4M
Genome Wide Association Coordinating CenterU01HG004446 · NHGRI · UNIVERSITY OF WASHINGTON · PI WEIR, BRUCE S. · 2007 to 2011
$6.6M
Molecular and Genetic Analysis of Lung Cancer SurvivalR01CA092824 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI CHRISTIANI, DAVID C · 2002 to 2013
$5.9M
SPORE in Lung CancerP20CA090578 · NCI · DANA-FARBER CANCER INSTITUTE · PI JOHNSON, BRUCE E. · 2003 to 2007
$5.1M
GENETIC SUSCEPTIBILITY TO LUNG CANCERR01CA074386 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI CHRISTIANI, DAVID C · 1997 to 2008
$4.8M
Genome-Wide Association StudiesZ01CP010200 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI FRAUMENI, JOSEPH · 2008 to 2008
$50k
Intramural NIH HHS Z01 CP010200NCI NIH HHS P20 CA090578NCI NIH HHS P30 CA014236NCI NIH HHS P50 CA090578NCI NIH HHS R01 CA074386NCI NIH HHS R01 CA092824NCI NIH HHS U01 CA209414NHGRI NIH HHS U01 HG004438NHGRI NIH HHS U01 HG004446
6 · The paper itself

Abstract

backgroundIFNγ is a pleiotropic cytokine that plays critical immunomodulatory roles in intercellular communication in innate and adaptive immune responses. Despite recognition of IFNγ signaling effects on host defense against viral infection and its utility in immunotherapy and tumor progression, the roles of genetic variants of the IFNγ signaling pathway genes in survival of patients with cancer remain unknown.

methodsWe used a discovery genotyping dataset from the Prostate, Lung, Colorectal and Ovarian Cancer Screening Trial (

resultsThe combined analysis identified two independent potentially functional SNPs,

conclusionsGenetic variants of IFNγ signaling genes are potential prognostic markers for NSCLC survival, likely through modulating the expression of key genes involved in host immune response. IMPACT: Once validated, these variants could be useful predictors of NSCLC survival.

Indexed as

Carcinoma, Non-Small-Cell LungFemaleHumansInterferon-gammaIntracellular Signaling Peptides and ProteinsLung NeoplasmsMaleProtein Inhibitors of Activated STATSignal TransductionSmall Ubiquitin-Related Modifier ProteinsSurvival AnalysisELP2 protein, humanInterferon-gammaIntracellular Signaling Peptides and ProteinsPIAS1 protein, humanProtein Inhibitors of Activated STATSmall Ubiquitin-Related Modifier Proteins

Identifiers

PMID32493705
PMCPMC7415606
OpenAlexW3028827845

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.