Evidence map›Paper›PMID 32493275›Full record

ArticleBMC plant biology2020

The MYB transcription factor CiMYB42 regulates limonoids biosynthesis in citrus.

Pan Zhang, Xiaofeng Liu, Xin Yu, Fusheng Wang, Junhong Long, Wanxia Shen, Dong Jiang, Xiaochun Zhao

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 36 citations in OpenAlex.

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  11. Methyl Jasmonate- and Salicylic Acid-Induced Transcription FactorInternational journal of molecular sciences · 2023
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  13. Identification of the passion fruit (Frontiers in plant science · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Pan ZhangCitrus Research Institute, Southwest University/Chinese Academy of Agricultural Sciences, Beibei, Chongqing, 400712, China.
Xiaofeng LiuCitrus Research Institute, Southwest University/Chinese Academy of Agricultural Sciences, Beibei, Chongqing, 400712, China.
Xin YuCitrus Research Institute, Southwest University/Chinese Academy of Agricultural Sciences, Beibei, Chongqing, 400712, China.
Fusheng WangCitrus Research Institute, Southwest University/Chinese Academy of Agricultural Sciences, Beibei, Chongqing, 400712, China.
Junhong LongCitrus Research Institute, Southwest University/Chinese Academy of Agricultural Sciences, Beibei, Chongqing, 400712, China.
Wanxia ShenCitrus Research Institute, Southwest University/Chinese Academy of Agricultural Sciences, Beibei, Chongqing, 400712, China.
Dong JiangCitrus Research Institute, Southwest University/Chinese Academy of Agricultural Sciences, Beibei, Chongqing, 400712, China.
Xiaochun ZhaoCitrus Research Institute, Southwest University/Chinese Academy of Agricultural Sciences, Beibei, Chongqing, 400712, China. zhaoxiaochun@cric.cn.
Chinese Academy of Agricultural Sciences · CNSouthwest University · CNCitrus Research Institute · CN

Funding

Chongqing Research Project of Foundations and Frontiers cstc2018jcyjAX0400Foundation for the Talents/Doctor by Southwest University SWU117038National Key R&D Program of China 2019YFD1001401-02the Earmarked Fund for China Agriculture Research System CARS-26
6 · The paper itself

Abstract

backgroundLimonoids are major bioactive compounds that are produced by the triterpenoid metabolic pathway. The detailed biochemical process of limonoid biosynthesis and the mechanism of its molecular regulation remain elusive. The identification of transcription factors that regulate limonoid biosynthetic pathways is very important for understanding the underlying regulatory mechanisms. This information could also provide tools for manipulating biosynthesis genes to modulate limonoid production.

resultsIn this study, the CiMYB42 transcription factor was isolated to identify its role in limonoid biosynthesis. Multiple alignment analysis and phylogenetic analysis demonstrated that CiMYB42 is a typical R2R3MYB transcription factor that shares high similarity of its amino acid sequence with AtMYB42. Limonoids contents were higher in Citrus sinensis and Citrus grandis than in other species. Limonoid accumulation during leaf development also showed diverse trends in different genotypes. The expression of CiMYB42 was significantly related to the limonoid content and the expression of CiOSC in some citrus accessions. The overexpression of CiMYB42 in sweet orange resulted in significant accumulation of limonin, whereas the downregulation of CiMYB42 by RNAi resulted in a dwarf phenotype and less nomilin accumulation. Furthermore, the results of a yeast one-hybrid assay and EMSA indicated that CiMYB42 binds exclusively to the TTGTTG sequence (type II MYB core) in the promoter of CiOSC. Together, these results suggest that CiMYB42 positively regulates limonoid biosynthesis by regulating the expression of CiOSC by binding to the TTGTTG sequence (type II MYB core) of its promoter.

conclusionsCiMYB42 is an important transcription activator involved in limonoid biosynthesis that regulates the expression of CiOSC by binding to the TTGTTG sequence (type II MYB core).

Indexed as

CitrusCitrus sinensisGene Expression Regulation, PlantLimoninsMetabolic Networks and PathwaysPhylogenyPlant LeavesPlant ProteinsSequence AlignmentTranscription FactorsLimoninsPlant ProteinsTranscription FactorsCiMYB42CiOSCLimonoid biosynthesisR2R3MYBTriterpenoid

Identifiers

PMID32493275
PMCPMC7271526
OpenAlexW3030390328

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.