Evidence map›Paper›PMID 32493210›Full record

ArticleBMC genomics2020

LPS-treatment of bovine endometrial epithelial cells causes differential DNA methylation of genes associated with inflammation and endometrial function.

Naveed Jhamat, Adnan Niazi, Yongzhi Guo, Metasu Chanrot, Elena Ivanova, Gavin Kelsey, Erik Bongcam-Rudloff, Göran Andersson, Patrice Humblot

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 38 citations in OpenAlex.

  1. Pooled it
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  5. Animals : an open access journal from MDPI · 2025
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  7. Profiling Genome-Wide Methylation Patterns in Cattle Infected withInternational journal of molecular sciences · 2024
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  10. Enrichment ofInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Naveed JhamatDepartment of Animal Breeding and Genetics, Section of Molecular Genetics, Swedish University of Agricultural Sciences, Uppsala, 750 07, Sweden.
Adnan NiaziDepartment of Animal Breeding and Genetics, Section of Molecular Genetics, Swedish University of Agricultural Sciences, Uppsala, 750 07, Sweden. adnan.niazi@slu.se.ORCID http://orcid.org/0000-0003-0311-5279
Yongzhi GuoDepartment of Clinical Sciences, Division of Reproduction, Swedish University of Agricultural Sciences, Uppsala, 750 07, Sweden.
Metasu ChanrotDepartment of Clinical Sciences, Division of Reproduction, Swedish University of Agricultural Sciences, Uppsala, 750 07, Sweden.
Elena IvanovaEpigenetics Programme, The Babraham Institute, Cambridge, UK.
Gavin KelseyEpigenetics Programme, The Babraham Institute, Cambridge, UK.
Erik Bongcam-RudloffDepartment of Animal Breeding and Genetics, Section of Molecular Genetics, Swedish University of Agricultural Sciences, Uppsala, 750 07, Sweden.
Göran AnderssonDepartment of Animal Breeding and Genetics, Section of Molecular Genetics, Swedish University of Agricultural Sciences, Uppsala, 750 07, Sweden.
Patrice HumblotDepartment of Clinical Sciences, Division of Reproduction, Swedish University of Agricultural Sciences, Uppsala, 750 07, Sweden.
Swedish University of Agricultural Sciences · SEBabraham Institute · GBUniversity of the Punjab · PKUppsala University · SE

Funding

Horizon 2020 KBBE 311776-PR
6 · The paper itself

Abstract

backgroundLipopolysaccharide (LPS) endotoxin stimulates pro-inflammatory pathways and is a key player in the pathological mechanisms involved in the development of endometritis. This study aimed to investigate LPS-induced DNA methylation changes in bovine endometrial epithelial cells (bEECs), which may affect endometrial function. Following in vitro culture, bEECs from three cows were either untreated (0) or exposed to 2 and 8 μg/mL LPS for 24 h.

resultsDNA samples extracted at 0 h and 24 h were sequenced using reduced representation bisulfite sequencing (RRBS). When comparing DNA methylation results at 24 h to time 0 h, a larger proportion of hypomethylated regions were identified in the LPS-treated groups, whereas the trend was opposite in controls. When comparing LPS groups to controls at 24 h, a total of 1291 differentially methylated regions (DMRs) were identified (55% hypomethylated and 45% hypermethylated). Integration of DNA methylation data obtained here with our previously published gene expression data obtained from the same samples showed a negative correlation (r = - 0.41 for gene promoter, r = - 0.22 for gene body regions, p < 0.05). Differential methylation analysis revealed that effects of LPS treatment were associated with methylation changes for genes involved in regulation of immune and inflammatory responses, cell adhesion, and external stimuli. Gene ontology and pathway analyses showed that most of the differentially methylated genes (DMGs) were associated with cell proliferation and apoptotic processes; and pathways such as calcium-, oxytocin- and MAPK-signaling pathways with recognized roles in innate immunity. Several DMGs were related to systemic inflammation and tissue re-modelling including HDAC4, IRAK1, AKT1, MAP3K6, Wnt7A and ADAMTS17.

conclusionsThe present results show that LPS altered the DNA methylation patterns of bovine endometrial epithelial cells. This information, combined with our previously reported changes in gene expression related to endometrial function, confirm that LPS activates pro-inflammatory mechanisms leading to perturbed immune balance and cell adhesion processes in the endometrium.

Indexed as

AnimalsCattleCells, CulturedDNA MethylationDose-Response Relationship, DrugEndometriumFemaleGene Expression ProfilingGene Expression RegulationGene OntologyGene Regulatory NetworksLipopolysaccharidesPromoter Regions, GeneticSequence Analysis, DNALipopolysaccharidesBovine endometrial epithelial cellsEndometritisImplantationInflammationLPSRRBS

Identifiers

PMID32493210
PMCPMC7268755
OpenAlexW3030163502

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.