Evidence map›Paper›PMID 32488710›Full record

ArticleEnvironmental science and pollution research international2020

GSTs polymorphisms are associated with epigenetic silencing of CDKN2A gene in esophageal squamous cell carcinoma.

Mohammad Mahdi Forghanifard, Azadeh Aarabi, Maryam Nasiri Aghdam, Bahram Memar, Mohammad Hasanzadeh Khayat, Ezzat Dadkhah, Mohammad Reza Abbaszadegan

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Article in Environmental science and pollution research international, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Mohammad Mahdi Forghanifard *Department of Biology, Damghan Branch, Islamic Azad University, Damghan, Iran.
Azadeh Aarabi *Immunology research center, Mashhad University of Medical Sciences, Mashhad, Iran.
Maryam Nasiri AghdamMedical Genetics Research Center, Mashhad University of Medical Sciences, Mashhad, Iran.
Bahram MemarDepartment of Pathology, Omeed Hospital, Mashhad University of Medical Sciences, Mashhad, 9196773117, Iran.
Mohammad Hasanzadeh KhayatPharmaceutical Research Center, Mashhad University of Medical Sciences, Mashhad, Iran.
Ezzat DadkhahSchool of Systems Biology, George Mason University, Manassas, VA, USA.
Mohammad Reza AbbaszadeganMedical Genetics Research Center, Mashhad University of Medical Sciences, Mashhad, Iran. abbaszadeganmr@mums.ac.ir.ORCID http://orcid.org/0000-0003-4539-048X
Mashhad University of Medical Sciences · IRGeorge Mason University · USIslamic Azad University, Damghan Branch · IR

Funding

mashhad university of medical sciences 85032
6 · The paper itself

Abstract

Esophageal cancer is the eighth most common cancer and the sixth most frequent cause of cancer mortality worldwide. Exposure to polycyclic aromatic hydrocarbons formed by incomplete combustion of organic matter is an important risk factor. Genetic polymorphisms in genes encoding PAH-metabolizing enzymes like glutathione S-transferases (GSTM1, GSTP1, GSTT1) which conjugate glutathione to PAHs for reduction of oxidative stress may affect an individual's response to PAH exposure. Genomic DNA from 50 esophageal squamous cell carcinoma patients extracted from peripheral blood. PCR-RFLP technique was employed to determine GSTM1, GSTT1, and GSTP1 polymorphisms. Aberrant promoter methylation of CDKN2A was applied by methylation-specific PCR technique. Concentration of urinary 1-hydroxypyrene was determined using a HPLC system. About 38.7% showed the null GSTM1 genotype (54% cases and 13% controls), 23.7% showed GSTT1 null genotype (30% cases and 13% controls), and 62.5% were GSTP1 A/A genotype (66% cases and 56% controls). Polymorphic variants of GSTM1 and GSTT1 were significantly associated with aberrant methylation of CDKN2A gene. The null state of GSTT1 was significantly associated with high concentrations of 1-OHP in urea (p < 0.01). There was significant association between methylated states of CDKN2A and high concentrations of 1-OHP in urine (p < 0.01). We identified significant association between polymorphism of GSTs genes and epigenetic silencing of tumor suppressor gene CDKN2A in esophageal squamous cell carcinoma.

Indexed as

Esophageal NeoplasmsEsophageal Squamous Cell CarcinomaCase-Control StudiesCyclin-Dependent Kinase Inhibitor p16Epigenesis, GeneticGenes, p16Genetic Predisposition to DiseaseGenotypeGlutathione S-Transferase piGlutathione TransferaseHumansPolymorphism, GeneticRisk FactorsCDKN2A protein, humanCyclin-Dependent Kinase Inhibitor p16Glutathione S-Transferase piglutathione S-transferase T1Glutathione TransferaseGSTP1 protein, humanEsophageal cancer (EC)Glutathione S-transferasesMethylationPolycyclic aromatic hydrocarbons (PAHs)Polymorphism

Identifiers

PMID32488710
OpenAlexW3030471952

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.