Evidence map›Paper›PMID 32488578›Full record

ArticleMolecular biology reports2020

Transcriptome analysis of heat stress response genes in potato leaves.

Ruimin Tang, Sanjay K Gupta, Suyan Niu, Xiu-Qing Li, Qing Yang, Guanshui Chen, Wenjiao Zhu, Muhammad Haroon

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Article in Molecular biology reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Review
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  5. Review
  6. Article
  7. Review
  8. Effects of Coverlys TF150International journal of molecular sciences · 2023
    Article
  9. StHsfB5 Promotes Heat Resistance by Directly Regulating the Expression ofInternational journal of molecular sciences · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ruimin TangCollege of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
Sanjay K GuptaDepartment of Soil, Water and Climate, University of Minnesota, 1991 Upper Bufford Circle, St. Paul, MN, 55108, USA.
Suyan NiuFredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, NB, E3B 4Z7, Canada.
Xiu-Qing LiFredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, NB, E3B 4Z7, Canada. Xiu-Qing.Li@canada.ca.
Qing YangCollege of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China. qyang19@njau.edu.cn.
Guanshui ChenFredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, NB, E3B 4Z7, Canada.
Wenjiao ZhuCollege of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
Muhammad HaroonFredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, NB, E3B 4Z7, Canada.

Funding

Natural Science Foundation of Jiangsu Province BK20180519
6 · The paper itself

Abstract

Heat stress has a severe impact on potato growth and tuberization process, always resulting in the decrease of tuber yield and quality. Therefore, it is of great significance for potato breeding to illuminate the mechanism of heat stress on potato and explore heat resistant genes. In this study, two cDNA libraries from normal potato leaves (20 °C day/18 °C night) and potato leaves with 3 days of heat treatment (35 °C day/28 °C night) were constructed respectively. Totally, 1420 differentially expressed genes (DEGs) were identified. The expression patterns of 12 randomly selected genes detected using droplet digital PCR agreed with the sequencing data. Gene ontology analysis showed that these DEGs were clustered into 49 different GO types, reflecting the functional diversity of the heat stress response genes. The results of KEGG pathway enrichment showed the potential biological pathways in which the DEGs were involved, indicating that these pathways may be involved in heat tolerance regulation. Most potato heat transcription factors (StHsfs) and heat shock proteins (StHsps) were not expressed efficiently based on expression profile of these DEGs. StHsp26-CP and StHsp70 were markedly increased after 3 days of heat treatment. These data will be useful for further understanding the molecular mechanisms of potato plant tolerance to heat stress and provide a basis for breeding heat-tolerance varieties.

Indexed as

DroughtsGene Expression ProfilingGene Expression Regulation, PlantGene LibraryGene OntologyGenes, PlantHeat-Shock ResponsePlant LeavesPlant ProteinsSolanum tuberosumStress, PhysiologicalTranscriptomePlant ProteinsDifferentially expressed genesDroplet digital PCRHeat stressPotatoTranscriptome sequencing

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.