Evidence map›Paper›PMID 32488405›Full record

ArticleCurrent microbiology2020

Transcriptome Analysis of the Acid Stress Response of Desulfovibrio vulgaris ATCC 7757.

Hang Yu, Zhiqiang Jiang, Yueer Lu, Xurong Yao, Chongyin Han, Ying Ouyang, Han Wang, Chuling Guo, Fei Ling, Zhi Dang

Abstract read
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In one paragraph

Article in Current microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. pH-dependent genotypic and phenotypic variability inApplied and environmental microbiology · 2025
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Hang YuSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006, People's Republic of China.
Zhiqiang JiangSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006, People's Republic of China.
Yueer LuSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006, People's Republic of China.
Xurong YaoSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006, People's Republic of China.
Chongyin HanSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006, People's Republic of China.
Ying OuyangSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006, People's Republic of China.
Han WangSchool of Environment and Energy, South China University of Technology, Guangzhou, 510006, People's Republic of China.
Chuling GuoSchool of Environment and Energy, South China University of Technology, Guangzhou, 510006, People's Republic of China.
Fei LingSchool of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006, People's Republic of China. fling@scut.edu.cn.
Zhi DangSchool of Environment and Energy, South China University of Technology, Guangzhou, 510006, People's Republic of China. chzdang@scut.edu.cn.
South China University of Technology · CN

Funding

Natural Science Foundation of Guangdong Province (CN) 2018A030313918the National Natural Science Foundation of China 41330639
6 · The paper itself

Abstract

The application of sulfate-reducing bacteria (SRB) shows great potential in the anaerobic biological treatment of acid mine wastewater; therefore, it has attracted much attention. The low pH in acidic wastewater affects the growth and reducing power of SRB. To uncover the mechanism underlying the reduction efficiency of SRB under acidic conditions, in this study, transcriptomic analysis was performed with Desulfovibrio vulgaris ATCC 7757 under three different pH conditions (pH 4.0, 5.5 and 7.0) and in the initial inoculation, logarithmic growth and plateau phases. Our results showed that ATCC 7757 still had biological activity at pH 4.0 and exhibited gene expression patterns at pH 4.0 that were different from those at pH 5.5 and pH 7. Importantly, the gene expression pattern was similar between pH 5.5 and pH 7. Transcriptomic analysis identified differentially expressed genes that affected the growth of ATCC 7757 under pH 7.0 at 22 h compared to 15 h; 196 of these genes were upregulated and 575 were downregulated. These differentially expressed genes were mainly enriched in genetic information processing and metabolism. Additionally, we identified 57 candidate genes associated with low-pH tolerance. Adaptation to low pH was reflected by an increase in the expression of genes involved in cell membrane structure and proton transport. The expression of genes involved in the reduction process decreased, including the genes DVU0499 and sat, which encode proteins that affect the sulfate reduction process. Both gene activities were validated by qPCR. Our results will contribute to further promoting the reducing power of SRB in acid mine wastewater and the development of successful bioremediation strategies.

Indexed as

Desulfovibrio vulgarisAcidsGene Expression ProfilingOxidation-ReductionSulfatesAcidsSulfates

Identifiers

PMID32488405
OpenAlexW3032063089

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.