Evidence map›Paper›PMID 32487217›Full record

ArticleParasites & vectors2020

Evaluation of a pan-Leishmania SL RNA qPCR assay for parasite detection in laboratory-reared and field-collected sand flies and reservoir hosts.

Myrthe Pareyn, Rik Hendrickx, Nigatu Girma, Sarah Hendrickx, Lieselotte Van Bockstal, Natalie Van Houtte, Simon Shibru, Louis Maes, Herwig Leirs, Guy Caljon

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in Parasites & vectors, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 2 pooled it
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 2 syntheses or guidelines pooled it, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Myrthe PareynEvolutionary Ecology Group, University of Antwerp, Wilrijk, Belgium. myrthe.pareyn@uantwerpen.be.ORCID http://orcid.org/0000-0002-8918-3901
Rik HendrickxLaboratory of Microbiology, Parasitology and Hygiene, University of Antwerp, Wilrijk, Belgium.
Nigatu GirmaBiology Department, Arba Minch University, Arba Minch, Ethiopia.
Sarah HendrickxLaboratory of Microbiology, Parasitology and Hygiene, University of Antwerp, Wilrijk, Belgium.
Lieselotte Van BockstalLaboratory of Microbiology, Parasitology and Hygiene, University of Antwerp, Wilrijk, Belgium.
Natalie Van HoutteEvolutionary Ecology Group, University of Antwerp, Wilrijk, Belgium.
Simon ShibruBiology Department, Arba Minch University, Arba Minch, Ethiopia.
Louis MaesLaboratory of Microbiology, Parasitology and Hygiene, University of Antwerp, Wilrijk, Belgium.
Herwig LeirsEvolutionary Ecology Group, University of Antwerp, Wilrijk, Belgium.
Guy CaljonLaboratory of Microbiology, Parasitology and Hygiene, University of Antwerp, Wilrijk, Belgium. guy.caljon@uantwerpen.be.
University of Antwerp · BEArba Minch University · ET

Funding

Fonds Wetenschappelijk Onderzoek 1136417NFonds Wetenschappelijk Onderzoek 12I0317NUniversiteit Antwerpen TT-ZAPBOF 33049Vlaamse Interuniversitaire Raad NDOC2016PR003
6 · The paper itself

Abstract

backgroundIn eco-epidemiological studies, Leishmania detection in vectors and reservoirs is frequently accomplished by high-throughput and sensitive molecular methods that target minicircle kinetoplast DNA (kDNA). A pan-Leishmania SYBR green quantitative PCR (qPCR) assay which detects the conserved spliced-leader RNA (SL RNA) sequence was developed recently. This study assessed the SL RNA assay performance combined with a crude extraction method for the detection of Leishmania in field-collected and laboratory-reared sand flies and in tissue samples from hyraxes as reservoir hosts.

methodsField-collected and laboratory-infected sand fly and hyrax extracts were subjected to three different qPCR approaches to assess the suitability of the SL RNA target for Leishmania detection. Nucleic acids of experimentally infected sand flies were isolated with a crude extraction buffer with ethanol precipitation and a commercial kit and tested for downstream DNA and RNA detection. Promastigotes were isolated from culture and sand fly midguts to assess whether there was difference in SL RNA and kDNA copy numbers. Naive sand flies were spiked with a serial dilution of promastigotes to make a standard curve.

resultsThe qPCR targeting SL RNA performed well on infected sand fly samples, despite preservation and extraction under presumed unfavorable conditions for downstream RNA detection. Nucleic acid extraction by a crude extraction buffer combined with a precipitation step was highly compatible with downstream SL RNA and kDNA detection. Copy numbers of kDNA were found to be identical in culture-derived parasites and promastigotes isolated from sand fly midguts. SL RNA levels were slightly lower in sand fly promastigotes (ΔCq 1.7). The theoretical limit of detection and quantification of the SL RNA qPCR respectively reached down to 10

conclusionsThis study shows that a crude extraction method in combination with the SL RNA qPCR assay is suitable for the detection and quantification of Leishmania in sand flies. The assay is inexpensive, sensitive and pan-Leishmania specific, and accordingly an excellent assay for high-throughput screening in entomological research.

Indexed as

AnimalsDisease ReservoirsDNA, KinetoplastFemaleHyraxesInsect VectorsLaboratoriesLeishmaniaPhlebotomusPsychodidaeReal-Time Polymerase Chain ReactionRNA, Spliced LeaderDNA, KinetoplastRNA, Spliced LeaderKinetoplast DNANucleic acid extractionReal-time PCRReservoirSand flySpliced leader RNA

Identifiers

PMID32487217
PMCPMC7268266
OpenAlexW3028837207

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.