Evidence map›Paper›PMID 32487018›Full record

ArticleBMC immunology2020

Formation of ultralong DH regions through genomic rearrangement.

Brevin A Smider, Vaughn V Smider

Abstract read
In one paragraph

Article in BMC immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Brevin A SmiderThe Applied Biomedical Science Institute, San Diego, CA, 92127, USA.
Vaughn V SmiderThe Applied Biomedical Science Institute, San Diego, CA, 92127, USA. vaughn.smider@absinstitute.org.ORCID 0000-0003-3488-6383

Funding

Molecular and Structural Studies of Antibody Diversity MechanismsR01GM105826 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI SMIDER, VAUGHN VASIL · 2014 to 2021
$3.1M
Defining clinically relevant viral epitopes with cow antibodiesR01HD088400 · NICHD · SCRIPPS RESEARCH INSTITUTE, THE · PI SMIDER, VAUGHN VASIL · 2017 to 2021
$1.8M
NICHD NIH HHS R01 HD088400NIGMS NIH HHS R01 GM105826
6 · The paper itself

Abstract

backgroundCow antibodies are very unusual in having exceptionally long CDR H3 regions. The genetic basis for this length largely derives from long heavy chain diversity (DH) regions, with a single "ultralong" DH, IGHD8-2, encoding over 50 amino acids. Many bovine IGHD regions have sequence similarity but have several nucleotide repeating units that diversify their lengths. Genomically, most DH regions exist in three clusters that appear to have formed from DNA duplication events. However, the relationship between the genomic arrangement and long CDR lengths is unclear.

resultsThe DH cluster containing IGHD8-2 underwent a rearrangement and deletion event in relation to the other clusters in the region corresponding to IGHD8-2, with possible fusion of two DH regions and expansion of short repeats to form the ultralong IGHD8-2 gene.

conclusionsLength heterogeneity within DH regions is a unique evolutionary genomic mechanism to create immune diversity, including formation of ultralong CDR H3 regions.

Indexed as

Amino Acid SequenceAnimalsAntibodiesCattleComplementarity Determining RegionsGene RearrangementGenomicsImmunoglobulin Heavy ChainsAntibodiesComplementarity Determining RegionsImmunoglobulin Heavy ChainsAntibody diversityBovine immunoglobulinCDR3 lengthCow antibodyDH regionImmunoglobulin repertoireUltralong CDR3

Identifiers

PMID32487018
PMCPMC7265228

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.