Evidence map›Paper›PMID 32485176›Full record

ArticleJournal of virological methods2020

Porcine epidemic diarrhea virus: Viral RNA detection and quantification using a validated one-step real time RT-PCR.

Lionel Bigault, Paul Brown, Cécilia Bernard, Yannick Blanchard, Béatrice Grasland

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virological methods, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Lionel BigaultAnses, Laboratory of Ploufragan-Plouzané-Niort, BP53, 22440, Ploufragan, France. Electronic address: lionel.bigault@anses.fr.
Paul BrownAnses, Laboratory of Ploufragan-Plouzané-Niort, BP53, 22440, Ploufragan, France.
Cécilia BernardAnses, Laboratory of Ploufragan-Plouzané-Niort, BP53, 22440, Ploufragan, France.
Yannick BlanchardAnses, Laboratory of Ploufragan-Plouzané-Niort, BP53, 22440, Ploufragan, France.
Béatrice GraslandAnses, Laboratory of Ploufragan-Plouzané-Niort, BP53, 22440, Ploufragan, France.
Hendrix Genetics (France) · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since 2014, porcine epidemic diarrhea virus (PEDV) has reemerged in Europe. RT-PCR methods have been described for the detection of PEDV, but none have been validated according to a norm. In this study we described the development and validation of a SYBR™ Green one-step RT-qPCR according to the French norm NF U47-600, for the detection and quantification of PEDV viral RNA. The method was validated from sample preparation (feces or jejunum) through to nucleic acid extraction and RT-qPCR detection. Specificity and sensitivity, limit of detection (LoD), limit of quantification (LQ), linearity, intra and inter assay variability were evaluated using transcribed RNA and fecal and jejunum matrices spiked with virus. The analytical and diagnostic specificities and sensitivities of this RT-qPCR were 100% in this study. A LoD of 50 genome copies/5 μl of extract from fecal matrices spiked with virus or RNA transcript and 100 genome copies/5 μl of extract from jejunum matrices spiked with virus were obtained. The Lower LQ (LLQ) was 100 genome copies/5 μl and the Upper LQ (ULQ) 10

Indexed as

AnimalsCoronavirus InfectionsDiarrheaEuropeFecesLimit of DetectionMicrobiological TechniquesPorcine epidemic diarrhea virusReal-Time Polymerase Chain ReactionRNA, ViralSensitivity and SpecificitySequence AlignmentSwineSwine DiseasesRNA, ViralNF U47-600Porcine epidemic diarrhea virusRT-qPCRValidation

Identifiers

PMID32485176
PMCPMC7261358
OpenAlexW3028984988

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.