Evidence map›Paper›PMID 32485079›Full record

ArticleHuman mutation2020

Suggested application of HER2+ breast tumor phenotype for germline TP53 variant classification within ACMG/AMP guidelines.

Cristina Fortuno, Jessica Mester, Tina Pesaran, Jeffrey N Weitzel, Jill Dolinsky, Amal Yussuf, Kelly McGoldrick, Judy E Garber, Sharon A Savage, Payal P Khincha and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Human mutation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Clinical and functional analysis of the germlineCold Spring Harbor molecular case studies · 2023
    Article
  8. Article
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  11. Article
  12. Article
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  14. Article
  15. GermlineCancers · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 11 institutions in 4 countries.

Cristina FortunoGenetics and Computational Division, QIMR Berghofer Medical Research Institute, Herston, Queensland, Australia.
Jessica MesterGeneDx, Gaithersburg, Maryland.ORCID 0000-0001-9374-3185
Tina PesaranAmbry Genetics, Aliso Viejo, California.
Jeffrey N WeitzelDivision of Clinical Cancer Genomics, City of Hope Comprehensive Cancer Center, Duarte, California.
Jill DolinskyAmbry Genetics, Aliso Viejo, California.
Amal YussufAmbry Genetics, Aliso Viejo, California.
Kelly McGoldrickAmbry Genetics, Aliso Viejo, California.
Judy E GarberCenter for Cancer Genetics and Prevention, Dana Farber Cancer Institute, Boston, Massachusetts.
Sharon A SavageDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Clinical Genetics Branch, Bethesda, Maryland.ORCID 0000-0001-6006-0740
Payal P KhinchaDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Clinical Genetics Branch, Bethesda, Maryland.
D Gareth EvansDepartment of Genomic Medicine, Manchester Academic Health Science Centre, University of Manchester, Manchester, UK.
Maria Isabel AchatzCentro de Oncologia, Hospital Sirio-Libanes, Sao Paulo, Brazil.
Kim E NicholsDivision of Cancer Predisposition, St. Jude Medical Center, Memphis, Tennessee.
Kara N MaxwellDivision of Hematology/Oncology, University of Pennsylvania, Philadelphia, Pennsylvania.
Joshua D SchiffmanHuntsman Cancer Institute, Salt Lake City, Utah.
Renata SandovalCentro de Oncologia, Hospital Sirio-Libanes, Sao Paulo, Brazil.
Li-Fraumeni Exploration (LIFE) Consortium
Paul A JamesParkville Familial Cancer Centre, Peter MacCallum Cancer Centre and Royal Melbourne Hospital, Melbourne, Victoria, Australia.ORCID 0000-0002-4361-4657
Amanda B SpurdleGenetics and Computational Division, QIMR Berghofer Medical Research Institute, Herston, Queensland, Australia.ORCID 0000-0003-1337-7897
Ambry Genetics (United States) · USHospital Sírio-Libanês · BRNational Cancer Institute · USQIMR Berghofer Medical Research Institute · AUCity of Hope · USDana-Farber Cancer Institute · USHuntsman Cancer Institute · USManchester Academic Health Science Centre · GBSt. Jude Children's Research Hospital · USThe Royal Melbourne Hospital · AUUniversity of Pennsylvania · US

Funding

Clinical Genetic Studies of Familial and Hereditary Cancer SyndromesZIACP010144 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI SAVAGE, SHARON A. · 2009 to 2025
$111.8M
Precision approaches to refining TP53-associated cancer riskR01CA242218 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI AMOS, CHRISTOPHER I., GARBER, JUDY E. · 2019 to 2023
$8.5M
Department of Health IS-BRC-1215-20007Intramural NIH HHS ZIA CP010144National Health and Medical Research Council ID1061779NCI NIH HHS R01 CA242218
6 · The paper itself

Abstract

Early onset breast cancer is the most common malignancy in women with Li-Fraumeni syndrome, caused by germline TP53 pathogenic variants. It has repeatedly been suggested that breast tumors from TP53 carriers are more likely to be HER2+ than those of noncarriers, but this information has not been incorporated into variant interpretation models for TP53. Breast tumor pathology is already being used quantitatively for assessing pathogenicity of germline variants in other genes, and it has been suggested that this type of evidence can be incorporated into current American College of Medical Genetics and Genomics/Association for Molecular Pathology (ACMG/AMP) guidelines for germline variant classification. Here, by reviewing published data and using internal datasets separated by different age groups, we investigated if breast tumor HER2+ status has utility as a predictor of TP53 germline variant pathogenicity, considering age at diagnosis. Overall, our results showed that the identification of HER2+ breast tumors diagnosed before the age of 40 can be conservatively incorporated into the current TP53-specific ACMG/AMP PP4 criterion, following a point system detailed in this manuscript. Further larger studies will be needed to reassess the value of HER2+ breast tumors diagnosed at a later age.

Indexed as

Germ-Line MutationAdultBreast NeoplasmsErb-b2 Receptor Tyrosine KinasesFemaleGuidelines as TopicHumansMiddle AgedPhenotypeTumor Suppressor Protein p53ERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesTP53 protein, humanTumor Suppressor Protein p53ACMGHER2TP53variant classification

Identifiers

PMID32485079
PMCPMC7484289
OpenAlexW3028252868

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.