Evidence map›Paper›PMID 32484960›Full record

ArticleThe EMBO journal2020

Nucleotide depletion reveals the impaired ribosome biogenesis checkpoint as a barrier against DNA damage.

Joffrey Pelletier, Ferran Riaño-Canalias, Eugènia Almacellas, Caroline Mauvezin, Sara Samino, Sonia Feu, Sandra Menoyo, Ana Domostegui, Marta Garcia-Cajide, Ramon Salazar and 8 more

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 36 citations in OpenAlex.

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  14. Ribosome biogenesis in disease: new players and therapeutic targets.Signal transduction and targeted therapy · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 1 country.

Joffrey Pelletier *Laboratory of Cancer Metabolism, ONCOBELL Program, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat, Spain.ORCID 0000-0001-9174-044X
Ferran Riaño-Canalias *Laboratory of Cancer Metabolism, ONCOBELL Program, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat, Spain.
Eugènia AlmacellasLaboratory of Cancer Metabolism, ONCOBELL Program, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat, Spain.ORCID 0000-0002-7726-8430
Caroline MauvezinLaboratory of Cancer Metabolism, ONCOBELL Program, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat, Spain.ORCID 0000-0003-4220-7272
Sara SaminoMetabolomics Platform, IISPV & University Rovira i Virgili, Tarragona, Spain.
Sonia FeuDepartment of Biomedicine, Faculty of Medicine, IDIBAPS Biomedical Research Institute, Hospital Clinic, University of Barcelona, Barcelona, Spain.
Sandra MenoyoLaboratory of Cancer Metabolism, ONCOBELL Program, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat, Spain.
Ana DomosteguiLaboratory of Cancer Metabolism, ONCOBELL Program, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat, Spain.
Marta Garcia-CajideLaboratory of Cancer Metabolism, ONCOBELL Program, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat, Spain.
Ramon SalazarLaboratory of Cancer Metabolism, ONCOBELL Program, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat, Spain.
Constanza CortésDepartment of Genetics and Microbiology, Faculty of Biosciences, Autonomous University of Barcelona, Barcelona, Spain.
Ricard MarcosDepartment of Genetics and Microbiology, Faculty of Biosciences, Autonomous University of Barcelona, Barcelona, Spain.
Albert TaulerLaboratory of Cancer Metabolism, ONCOBELL Program, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat, Spain.
Oscar YanesMetabolomics Platform, IISPV & University Rovira i Virgili, Tarragona, Spain.
Neus AgellDepartment of Biomedicine, Faculty of Medicine, IDIBAPS Biomedical Research Institute, Hospital Clinic, University of Barcelona, Barcelona, Spain.ORCID 0000-0002-1205-6074
Sara C KozmaLaboratory of Cancer Metabolism, ONCOBELL Program, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat, Spain.
Antonio GentilellaLaboratory of Cancer Metabolism, ONCOBELL Program, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat, Spain.
George ThomasLaboratory of Cancer Metabolism, ONCOBELL Program, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, L'Hospitalet de Llobregat, Spain.ORCID 0000-0002-1236-1714
Institut d'Investigació Biomédica de Bellvitge · ESCentro de Investigación Biomédica en Red Diabetes y Enfermedades Metabólicas Asociadas · ESConsorci Institut D'Investigacions Biomediques August Pi I Sunyer · ESUniversitat Autònoma de Barcelona · ESInstitut Català d'Ornitologia · ES

Funding

Autophagy, mTOR inhibitors and phenformin in hepatocellular carcinomaR21CA191814 · NCI · UNIVERSITY OF CINCINNATI · PI MERCER, CAROL · 2015 to 2016
$406k
European Commission (EC) PCIG10-GA-2011-304160Fondation ARC pour la Recherche sur le Cancer (ARC) SAE20140601346Fundación Científica Asociación Española Contra el Cáncer (AECC) GCB-142035THOMGovernment of Catalonia | Agència de Gestió d'Ajuts Universitaris i de Recerca (AGAUR) 2014SGR-870Government of Catalonia | Agència de Gestió d'Ajuts Universitaris i de Recerca (AGAUR) AGAUR-2017 SGR 01743HHS | NIH | National Cancer Institute (NCI) R01-CA191814MEC | Instituto de Salud Carlos III (ISCIII) RD12/0036/0049Ministerio de Economía, Industria y Competitividad, Gobierno de España (MINECO) SAF2014-52162-PMinisterio de Economía, Industria y Competitividad, Gobierno de España (MINECO) SAF2016-76239-RMinisterio de Economía, Industria y Competitividad, Gobierno de España (MINECO) SAF2017-84301-PNCI NIH HHS R21 CA191814
6 · The paper itself

Abstract

Many oncogenes enhance nucleotide usage to increase ribosome content, DNA replication, and cell proliferation, but in parallel trigger p53 activation. Both the impaired ribosome biogenesis checkpoint (IRBC) and the DNA damage response (DDR) have been implicated in p53 activation following nucleotide depletion. However, it is difficult to reconcile the two checkpoints operating together, as the IRBC induces p21-mediated G1 arrest, whereas the DDR requires that cells enter S phase. Gradual inhibition of inosine monophosphate dehydrogenase (IMPDH), an enzyme required for de novo GMP synthesis, reveals a hierarchical organization of these two checkpoints. We find that the IRBC is the primary nucleotide sensor, but increased IMPDH inhibition leads to p21 degradation, compromising IRBC-mediated G1 arrest and allowing S phase entry and DDR activation. Disruption of the IRBC alone is sufficient to elicit the DDR, which is strongly enhanced by IMPDH inhibition, suggesting that the IRBC acts as a barrier against genomic instability.

Indexed as

DNA DamageG1 Phase Cell Cycle CheckpointsHCT116 CellsHumansNucleotidesRibosomesTumor Suppressor Protein p53NucleotidesTP53 protein, humanTumor Suppressor Protein p53IMPDHIRBCnucleotidesp21p53

Identifiers

PMID32484960
PMCPMC7327477
OpenAlexW3030498015

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.