Evidence map›Paper›PMID 32484313›Full record

ArticleEMBO reports2020

Karyopherin Kap114p-mediated trans-repression controls ribosomal gene expression under saline stress.

Chung-Chi Liao, Sahana Shankar, Wen-Chieh Pi, Chih-Chia Chang, Golam Rizvee Ahmed, Wei-Yi Chen, Kuo-Chiang Hsia

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Mechanism of RanGTP priming H2A-H2B release from Kap114 in an atypical RanGTP•Kap114•H2A-H2B complex.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Morphological growth dynamics, mechanical stability, and active microtubule mechanics underlying spindle self-organization.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Chung-Chi LiaoInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan.
Sahana ShankarInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan.
Wen-Chieh PiInstitute of Biochemistry and Molecular Biology, College of Life Sciences, National Yang-Ming University, Taipei, Taiwan.
Chih-Chia ChangInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan.
Golam Rizvee AhmedInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan.
Wei-Yi ChenInstitute of Biochemistry and Molecular Biology, College of Life Sciences, National Yang-Ming University, Taipei, Taiwan.
Kuo-Chiang HsiaInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan.ORCID 0000-0002-4409-6732
Institute of Molecular Biology, Academia Sinica · TWNational Yang Ming Chiao Tung University · TW

Funding

Academia Sinica AS-CDA-106-L02Ministry of Science and Technology, Taiwan MOST-106-2311-B-001-038-MY3Ministry of Science and Technology, Taiwan MOST-107-2320-B-010-024-MY3
6 · The paper itself

Abstract

Nuclear accessibility of transcription factors controls gene expression, co-regulated by Ran-dependent nuclear localization and a competitive regulatory network. Here, we reveal that nuclear import factor-facilitated transcriptional repression attenuates ribosome biogenesis under chronic salt stress. Kap114p, one of the karyopherin-βs (Kap-βs) that mediates nuclear import of yeast TATA-binding protein (yTBP), exhibits a yTBP-binding affinity four orders of magnitude greater than its counterparts and suppresses binding of yTBP with DNA. Our crystal structure of Kap114p reveals an extensively negatively charged concave surface, accounting for high-affinity basic-protein binding. KAP114 knockout in yeast leads to a high-salt growth defect, with transcriptomic analyses revealing that Kap114p modulates expression of genes associated with ribosomal biogenesis by suppressing yTBP binding to target promoters, a trans-repression mechanism we attribute to reduced nuclear Ran levels under salinity stress. Our findings reveal that Ran integrates the nuclear transport pathway and transcription regulatory network, allowing yeast to respond to environmental stresses.

Indexed as

KaryopherinsSaccharomyces cerevisiae Proteinsbeta KaryopherinsCell NucleusGene ExpressionNuclear ProteinsRibosomesbeta KaryopherinsKaryopherinsNuclear ProteinsSaccharomyces cerevisiae Proteinshigh salinitykaryopherin-βnucleocytoplasmic transportTATA-box-binding proteinX-ray crystallography

Identifiers

PMID32484313
PMCPMC7332979
OpenAlexW3031025590

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.