Evidence map›Paper›PMID 32483723›Full record

ArticleFunctional & integrative genomics2020

CRISPR/Cas9 genome editing shows the important role of AZC_2928 gene in nitrogen-fixing bacteria of plants.

Xiaojing Wang, Sang Lv, Tao Liu, Jiale Wei, Shiyuan Qu, Yi Lu, Junbiao Zhang, Sanda Oo, Baohong Zhang, Xiaoping Pan and 1 more

Abstract read
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In one paragraph

Article in Functional & integrative genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Xiaojing WangCollege of Science, Northwest A&F University, Yangling, 712100, Shaanxi, People's Republic of China.
Sang LvCollege of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, People's Republic of China.
Tao LiuCollege of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, People's Republic of China.
Jiale WeiCollege of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, People's Republic of China.
Shiyuan QuCollege of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, People's Republic of China.
Yi LuCollege of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, People's Republic of China.
Junbiao ZhangCollege of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, People's Republic of China.
Sanda OoDepartment of Biology, East Carolina University, Greenville, NC, 27858, USA.
Baohong ZhangDepartment of Biology, East Carolina University, Greenville, NC, 27858, USA.
Xiaoping PanDepartment of Biology, East Carolina University, Greenville, NC, 27858, USA. panx@ecu.edu.
Huawei LiuCollege of Life Sciences, Northwest A&F University, Yangling, 712100, Shaanxi, People's Republic of China. bioche@nwsuaf.edu.cn.
Northwest A&F University · CNEast Carolina University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

AZC_2928 gene (GenBank accession no. BAF88926.1) of Azorhizobium caulinodans ORS571 has sequence homology to 2,3-aminomutases. However, its function is unknown. In this study, we are for the first time to knock out the gene completely in A. caulinodans ORS571 using the current advanced genome editing tool, CRISPR/Cas9. Our results show that the editing efficiency is 34% and AZC_2928 plays an extremely important role in regulating the formation of chemotaxis and biofilm. CRISPR/Cas9 knockout of AZC_2928 (△AZC_2928) significantly enhanced chemotaxis and biofilm formation. Both chemotaxis and biofilm formation play an important role in nitrogen-fixing bacteria and their interaction with their host plants. Interestingly, AZC_2928 did not affect the motility of A. caulinodans ORS571 and the nodulation formation in their natural host plant, Sesbania rostrata. Due to rhizobia needing to form bacteroids for symbiotic nitrogen fixation in mature nodules, AZC_2928 might have a direct influence on nitrogen fixation efficiency rather than the number of nodulations.

Indexed as

CRISPR-Cas SystemsGene EditingAzorhizobium caulinodansBacterial ProteinsBiofilmsChemotaxisGene Knockout TechniquesGenes, BacterialNitrogen FixationPlant Root NodulationSequence Analysis, ProteinSesbaniaBacterial ProteinsAZC_2928Azorhizobium caulinodans ORS571CRISPR/Cas9Genome editingPlantSymbiotic nitrogen fixation

Identifiers

PMID32483723
OpenAlexW3031170193

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.