Evidence map›Paper›PMID 32483335›Full record

ArticleNature methods2020

Real-time 3D movement correction for two-photon imaging in behaving animals.

Victoria A Griffiths, Antoine M Valera, Joanna Yn Lau, Hana Roš, Thomas J Younts, Bóris Marin, Chiara Baragli, Diccon Coyle, Geoffrey J Evans, George Konstantinou and 6 more

Open access · greenAbstract read
In one paragraph

Article in Nature methods, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 85 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Suite3D: Volumetric cell detection for two-photon microscopy.bioRxiv : the preprint server for biology · 2025
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. CRASH2p: Closed-loop Two Photon Imaging in a Freely Moving Animal.bioRxiv : the preprint server for biology · 2024
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 3 countries.

Victoria A Griffiths *Department of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
Antoine M Valera *Department of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
Joanna Yn LauDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
Hana RošDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
Thomas J YountsDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
Bóris MarinDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, UK.ORCID http://orcid.org/0000-0001-5503-648X
Chiara BaragliDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
Diccon CoyleDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
Geoffrey J EvansDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
George KonstantinouDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
Theo KoimtzisDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
K M Naga Srinivas NadellaDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
Sameer A PundeDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
Paul A KirkbyDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
Isaac H BiancoDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, UK.
R Angus SilverDepartment of Neuroscience, Physiology and Pharmacology, University College London, London, UK. a.silver@ucl.ac.uk.ORCID http://orcid.org/0000-0002-5480-6638
University College London · GBBMI The Droitwich Spa Hospital · GBThe Francis Crick Institute · GB

Funding

Development and dissemination of high speed 3D acousto-optic lens two-photon microscopy for in vivo imagingU01NS099689 · NINDS · UNIVERSITY COLLEGE LONDON · PI DIGREGORIO, DAVID A, HAUSSER, MICHAEL · 2016 to 2018
$1.9M
Optimization and dissemination of non-linear Acousto-Optic Lens two-photon microscopy for high speed multiscale 3D imagingU01NS113273 · NINDS · UNIVERSITY COLLEGE LONDON · PI CARDIN, JESSICA A, DIAMOND, JEFFREY S · 2019 to 2021
$1.7M
NINDS NIH HHS U01 NS099689NINDS NIH HHS U01 NS113273Wellcome Trust 203048/Z/16/Z
6 · The paper itself

Abstract

Two-photon microscopy is widely used to investigate brain function across multiple spatial scales. However, measurements of neural activity are compromised by brain movement in behaving animals. Brain motion-induced artifacts are typically corrected using post hoc processing of two-dimensional images, but this approach is slow and does not correct for axial movements. Moreover, the deleterious effects of brain movement on high-speed imaging of small regions of interest and photostimulation cannot be corrected post hoc. To address this problem, we combined random-access three-dimensional (3D) laser scanning using an acousto-optic lens and rapid closed-loop field programmable gate array processing to track 3D brain movement and correct motion artifacts in real time at up to 1 kHz. Our recordings from synapses, dendrites and large neuronal populations in behaving mice and zebrafish demonstrate real-time movement-corrected 3D two-photon imaging with submicrometer precision.

Indexed as

AnimalsFemaleImaging, Three-DimensionalMaleMiceMice, Inbred C57BLMicroscopy, Fluorescence, MultiphotonMovementZebrafish

Identifiers

PMID32483335
PMCPMC7370269
OpenAlexW3029187404

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.