Evidence map›Paper›PMID 32483117›Full record

ArticleNature communications2020

Suppression of unwanted CRISPR-Cas9 editing by co-administration of catalytically inactivating truncated guide RNAs.

John C Rose, Nicholas A Popp, Christopher D Richardson, Jason J Stephany, Julie Mathieu, Cindy T Wei, Jacob E Corn, Dustin J Maly, Douglas M Fowler

Abstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. The cellular model for Alzheimer's disease research: PC12 cells.Frontiers in molecular neuroscience · 2022
    Pooled it
  2. Article
  3. Article
  4. A guide RNA repeat checkpoint steers CRISPR-Cas9 catalysis.bioRxiv : the preprint server for biology · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

John C Rose *Department of Chemistry, University of Washington, Seattle, WA, 98195, USA. jackrose@stanford.edu.ORCID http://orcid.org/0000-0003-1810-4337
Nicholas A Popp *Department of Genome Sciences, University of Washington, Seattle, WA, 98195, USA.ORCID http://orcid.org/0000-0001-9374-3070
Christopher D RichardsonInnovative Genomics Initiative, University of California, Berkeley, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0003-3122-4851
Jason J StephanyDepartment of Genome Sciences, University of Washington, Seattle, WA, 98195, USA.
Julie MathieuDepartment of Comparative Medicine, Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, 98109, USA.
Cindy T WeiDepartment of Chemistry, University of Washington, Seattle, WA, 98195, USA.ORCID http://orcid.org/0000-0002-0032-9581
Jacob E CornInnovative Genomics Initiative, University of California, Berkeley, Berkeley, CA, 94720, USA.ORCID http://orcid.org/0000-0002-7798-5309
Dustin J MalyDepartment of Chemistry, University of Washington, Seattle, WA, 98195, USA. djmaly@uw.edu.ORCID http://orcid.org/0000-0003-0094-0177
Douglas M FowlerDepartment of Genome Sciences, University of Washington, Seattle, WA, 98195, USA. dfowler@uw.edu.ORCID http://orcid.org/0000-0001-7614-1713

Funding

Vector and Transgenic Mouse CoreP30DK017047 · NIDDK · UNIVERSITY OF WASHINGTON · PI REBECCA LUCY HULL-MEICHLE · 1986 to 2026
$41.4M
University of Washington Medical Scientist Training Program: MD/PhDT32GM007266 · NIGMS · UNIVERSITY OF WASHINGTON · PI HORWITZ, MARSHALL S. · 1985 to 2023
$30.4M
New Molecular Probes For Protein KinasesR01GM086858 · NIGMS · UNIVERSITY OF WASHINGTON · PI MALY, DUSTIN J · 2008 to 2025
$5.5M
Large-Scale Methods for Assessing the Consequences of Mutations in ProteinsR01GM109110 · NIGMS · UNIVERSITY OF WASHINGTON · PI FOWLER, DOUGLAS M · 2014 to 2021
$2.4M
Design and Development of a Small Molecule-controlled Activator of RASF30CA189793 · NCI · UNIVERSITY OF WASHINGTON · PI ROSE, JOHN CHRISTOPHER · 2014 to 2017
$162k
NCI NIH HHS F30 CA189793NIDDK NIH HHS P30 DK017047NIGMS NIH HHS R01 GM086858NIGMS NIH HHS R01 GM109110NIGMS NIH HHS T32 GM007266
6 · The paper itself

Abstract

CRISPR-Cas9 nucleases are powerful genome engineering tools, but unwanted cleavage at off-target and previously edited sites remains a major concern. Numerous strategies to reduce unwanted cleavage have been devised, but all are imperfect. Here, we report that off-target sites can be shielded from the active Cas9•single guide RNA (sgRNA) complex through the co-administration of dead-RNAs (dRNAs), truncated guide RNAs that direct Cas9 binding but not cleavage. dRNAs can effectively suppress a wide-range of off-targets with minimal optimization while preserving on-target editing, and they can be multiplexed to suppress several off-targets simultaneously. dRNAs can be combined with high-specificity Cas9 variants, which often do not eliminate all unwanted editing. Moreover, dRNAs can prevent cleavage of homology-directed repair (HDR)-corrected sites, facilitating scarless editing by eliminating the need for blocking mutations. Thus, we enable precise genome editing by establishing a flexible approach for suppressing unwanted editing of both off-targets and HDR-corrected sites.

Indexed as

CRISPR-Cas SystemsMutationAnimalsBase SequenceBinding SitesBiocatalysisCell Line, TumorCells, CulturedDNA RepairGene EditingHEK293 CellsHumansMiceModels, GeneticRNA, Guide, CRISPR-Cas SystemsRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID32483117
PMCPMC7264211

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.