Evidence map›Paper›PMID 32482879›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Natural cryptic variation in epigenetic modulation of an embryonic gene regulatory network.

Chee Kiang Ewe, Yamila N Torres Cleuren, Sagen E Flowers, Geneva Alok, Russell G Snell, Joel H Rothman

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  3. Evolutionary Change in Gut Specification inJournal of developmental biology · 2023
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Chee Kiang EweDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, CA 93117.ORCID 0000-0003-1973-1308
Yamila N Torres CleurenDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, CA 93117; yamila.cleuren@uib.no joel.rothman@lifesci.ucsb.edu.ORCID 0000-0003-2218-7243
Sagen E FlowersDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, CA 93117.ORCID 0000-0002-7818-2188
Geneva AlokDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, CA 93117.ORCID 0000-0001-6257-2344
Russell G SnellNeuroscience Research Institute, University of California, Santa Barbara, CA 93117.ORCID 0000-0002-8166-4014
Joel H RothmanDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, CA 93117; yamila.cleuren@uib.no joel.rothman@lifesci.ucsb.edu.ORCID 0000-0002-6844-1377
University of Auckland · NZUniversity of California, Santa Barbara · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Developmental reprogramming and transorganogenesisR01HD081266 · NICHD · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI Joel H. Rothman · 2015 to 2026
$3.0M
Plasticity in an embryonic gene regulatory networkR01HD082347 · NICHD · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI ROTHMAN, JOEL H. · 2015 to 2019
$1.5M
Plasticity in an embryonic gene regulatory networkR01GM143771 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI ROTHMAN, JOEL H. · 2021 to 2024
$1.3M
NICHD NIH HHS R01 HD081266NICHD NIH HHS R01 HD082347NIGMS NIH HHS R01 GM143771NIH HHS P40 OD010440
6 · The paper itself

Abstract

Gene regulatory networks (GRNs) that direct animal embryogenesis must respond to varying environmental and physiological conditions to ensure robust construction of organ systems. While GRNs are evolutionarily modified by natural genomic variation, the roles of epigenetic processes in shaping plasticity of GRN architecture are not well understood. The endoderm GRN in

Indexed as

Gene Regulatory NetworksAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsDNA-Binding ProteinsEpigenesis, GeneticGene Expression Regulation, DevelopmentalHistone-Lysine N-MethyltransferaseTranscription FactorsCaenorhabditis elegans ProteinsDNA-Binding ProteinsHistone-Lysine N-MethyltransferaseMet-2 protein, C elegansskn-1 protein, C elegansTranscription Factorsendodermepigenetic inheritanceimprintingparent-of-origin effectSKN-1

Identifiers

PMID32482879
PMCPMC7306808
OpenAlexW3028900815

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.