Evidence map›Paper›PMID 32479638›Full record

ArticleJournal of experimental botany2020

The chromatin-modifying protein HUB2 is involved in the regulation of lignin composition in xylem vessels.

Bo Zhang, Bernadette Sztojka, Carolin Seyfferth, Sacha Escamez, Pál Miskolczi, Maxime Chantreau, László Bakó, Nicolas Delhomme, András Gorzsás, Rishikesh P Bhalerao and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Bo ZhangUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, Sweden.
Bernadette SztojkaUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, Sweden.
Carolin SeyfferthUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, Sweden.
Sacha EscamezUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, Sweden.
Pál MiskolcziUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden.
Maxime ChantreauUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, Sweden.
László BakóUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, Sweden.
Nicolas DelhommeUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden.
András GorzsásDepartment of Chemistry, Umeå University, Umeå, Sweden.
Rishikesh P BhaleraoUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå, Sweden.
Hannele TuominenUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, Sweden.
Umeå Plant Science Centre · SESwedish University of Agricultural Sciences · SEUmeå University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PIRIN2 (PRN2) was earlier reported to suppress syringyl (S)-type lignin accumulation of xylem vessels of Arabidopsis thaliana. In the present study, we report yeast two-hybrid results supporting the interaction of PRN2 with HISTONE MONOUBIQUITINATION2 (HUB2) in Arabidopsis. HUB2 has been previously implicated in several plant developmental processes, but not in lignification. Interaction between PRN2 and HUB2 was verified by β-galactosidase enzymatic and co-immunoprecipitation assays. HUB2 promoted the deposition of S-type lignin in the secondary cell walls of both stem and hypocotyl tissues, as analysed by pyrolysis-GC/MS. Chemical fingerprinting of individual xylem vessel cell walls by Raman and Fourier transform infrared microspectroscopy supported the function of HUB2 in lignin deposition. These results, together with a genetic analysis of the hub2 prn2 double mutant, support the antagonistic function of PRN2 and HUB2 in deposition of S-type lignin. Transcriptome analyses indicated the opposite regulation of the S-type lignin biosynthetic gene FERULATE-5-HYDROXYLASE1 by PRN2 and HUB2 as the underlying mechanism. PRN2 and HUB2 promoter activities co-localized in cells neighbouring the xylem vessel elements, suggesting that the S-type lignin-promoting function of HUB2 is antagonized by PRN2 for the benefit of the guaiacyl (G)-type lignin enrichment of the neighbouring xylem vessel elements.

Indexed as

ArabidopsisArabidopsis ProteinsCell WallChromatinGene Expression Regulation, PlantLigninUbiquitin-Protein LigasesXylemArabidopsis ProteinsChromatinHUB2 protein, ArabidopsisLigninUbiquitin-Protein LigasesArabidopsiscell wall chemistryHUB2ligninPIRIN2syringyl-type ligninxylem vessels

Identifiers

PMID32479638
PMCPMC7501814
OpenAlexW3031035611

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.