Evidence map›Paper›PMID 32478869›Full record

ArticleInternational journal of cancer2020

Identifying predictors of HPV-related head and neck squamous cell carcinoma progression and survival through patient-derived models.

Nicole D Facompre, Pavithra Rajagopalan, Varun Sahu, Alexander T Pearson, Kathleen T Montone, Claire D James, Frederico O Gleber-Netto, Gregory S Weinstein, Jalal Jalaly, Alexander Lin and 10 more

Open access · greenAbstract read
In one paragraph

Article in International journal of cancer, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
6.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 54 citations in OpenAlex.

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  20. Oropharyngeal cancer outcomes correlate with p16 status, multinucleation and immune infiltration.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 1 country.

Nicole D FacompreDepartment of Otorhinolaryngology, The University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Pavithra RajagopalanDepartment of Otorhinolaryngology, The University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Varun SahuDepartment of Otorhinolaryngology, The University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Alexander T PearsonDepartment of Medicine, The University of Chicago, Chicago, Illinois, USA.
Kathleen T MontoneDepartment of Pathology, The University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Claire D JamesSchool of Dentistry, Virginia Commonwealth University, Richmond, Virginia, USA.
Frederico O Gleber-NettoDepartment of Head and Neck Surgery, The MD Anderson Cancer Center, Houston, Texas, USA.
Gregory S WeinsteinDepartment of Otorhinolaryngology, The University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Jalal JalalyDepartment of Pathology, The University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Alexander LinDepartment of Radiation Oncology, The University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Anil K RustgiDepartment of Medicine, The University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Hiroshi NakagawaDepartment of Medicine, The University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Joseph A CalifanoDepartment of Surgery, University of California San Diego, San Diego, California, USA.
Curtis R PickeringDepartment of Head and Neck Surgery, The MD Anderson Cancer Center, Houston, Texas, USA.
Elizabeth A WhiteDepartment of Otorhinolaryngology, The University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Bradford E WindleSchool of Dentistry, Virginia Commonwealth University, Richmond, Virginia, USA.
Iain M MorganSchool of Dentistry, Virginia Commonwealth University, Richmond, Virginia, USA.
Roger B CohenDepartment of Medicine, The University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Phyllis A GimottyDepartment of Biostatistics, The University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Devraj BasuDepartment of Otorhinolaryngology, The University of Pennsylvania, Philadelphia, Pennsylvania, USA.ORCID 0000-0003-0896-1490
Hospital of the University of Pennsylvania · USUniversity of Pennsylvania · USVirginia Commonwealth University · USThe University of Texas MD Anderson Cancer Center · USThe Wistar Institute · USUniversity of California San Diego · USUniversity of Chicago · US

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI PAUL M. LIEBERMAN · 1985 to 2026
$75.9M
TRANSGENIC AND CHIMERIC MOUSE COREP30DK050306 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI REBECCA G WELLS · 1997 to 2026
$32.5M
JARID1B-mediated epigenetic regulation of oncogenic signals in oral cancerR01DE027185 · NIDCR · UNIVERSITY OF PENNSYLVANIA · PI BASU, DEVRAJ · 2018 to 2021
$1.5M
A reasoned approach to combination therapy development in head and neck cancerK08DE026500 · NIDCR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PEARSON, ALEXANDER THOMAS · 2016 to 2020
$800k
JARID1B-mediated epigenetic regulation of oncogenic signals in oral cancerR56DE027185 · NIDCR · UNIVERSITY OF PENNSYLVANIA · PI BASU, DEVRAJ · 2017 to 2017
$362k
NCI NIH HHS P30 CA010815NIDCR NIH HHS K08 DE026500NIDCR NIH HHS R01 DE027185NIDCR NIH HHS R01-DE027185NIDCR NIH HHS R56 DE027185NIDDK NIH HHS P30 DK050306NIH HHS P30-CA010815NIH HHS P30-CA016620NIH HHS P30-DK050306
6 · The paper itself

Abstract

Therapeutic innovation for human papilloma virus-related (HPV+) head and neck squamous cell carcinomas (HNSCCs) is impaired by inadequate preclinical models and the absence of accurate biomarkers. Our study establishes the first well-characterized panel of patient-derived xenografts (PDXs) and organoids from HPV+ HNSCCs while determining fidelity of the models to the distinguishing genetic features of this cancer type. Despite low engraftment rates, whole exome sequencing showed that PDXs retain multiple distinguishing features of HPV+ HNSCC lost in existing cell lines, including PIK3CA mutations, TRAF3 deletion and the absence of EGFR amplifications. Engrafted HPV+ tumors frequently contained NOTCH1 mutations, thus providing new models for a negatively prognostic alteration in this disease. Genotype-phenotype associations in the models were then tested for prediction of tumor progression and survival in published clinical cohorts. Observation of high tumor mutational burdens (TMBs) in the faster-growing models facilitated identification of a novel association between TMB and local progression in both HPV+ and HPV- patients that was prognostic in HPV- cases. In addition, reduced E7 and p16

Indexed as

AnimalsClass I Phosphatidylinositol 3-KinasesErbB ReceptorsExome SequencingFemaleGenetic Association StudiesHead and Neck NeoplasmsHumansMaleMiceMutationNeoplasm TransplantationPapillomaviridaePapillomavirus E7 ProteinsPapillomavirus InfectionsPatient-Specific ModelingClass I Phosphatidylinositol 3-KinasesEGFR protein, humanErbB ReceptorsPapillomavirus E7 ProteinsPIK3CA protein, humanTNF Receptor-Associated Factor 3TRAF3 protein, humanbiomarkershead and neck cancerHPVoutcomespatient-derived xenografts

Identifiers

PMID32478869
PMCPMC7554059
OpenAlexW3032066929

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.