Evidence map›Paper›PMID 32478796›Full record

ArticleGenetics and molecular biology2020

Fusarium oxysporum f. sp. phaseoli genetic variability assessed by new developed microsatellites.

Graziéle R Sasseron, Luciana L Benchimol-Reis, Juliana M K C Perseguini, Jean Fausto C Paulino, Miklos M Bajay, Sérgio A M Carbonell, Alisson F Chiorato

Open access · goldAbstract read
In one paragraph

Article in Genetics and molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. The Genome ofInternational journal of molecular sciences · 2023
    Article
  3. Article
  4. Article
  5. Nanopore and Illumina Genome Sequencing ofFrontiers in genetics · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Graziéle R SasseronInstituto Agrônomico (IAC), Centro de Pesquisa em Recursos Genéticos, Campinas, SP, Brazil.
Luciana L Benchimol-ReisInstituto Agrônomico (IAC), Centro de Pesquisa em Recursos Genéticos, Campinas, SP, Brazil.ORCID http://orcid.org/0000-0003-1008-5936
Juliana M K C PerseguiniUniversidade Tecnológica Federal do Paraná, Dois Vizinhos, PR, Brazil.
Jean Fausto C PaulinoInstituto Agrônomico (IAC), Centro de Pesquisa em Recursos Genéticos, Campinas, SP, Brazil.
Miklos M BajayUniversidade do Estado de Santa Catarina (UDESC), Centro de Educação Superior da Região Sul da (CERES), Departamento de Engenharia de Pesca e Ciências Biológicas (DEPB), Laguna, SC, Brazil.
Sérgio A M CarbonellInstituto Agrônomico (IAC), Centro de Análise e Pesquisa Tecnológica do Agronegócio dos Grãos e Fibras, Campinas, SP, Brazil.
Alisson F ChioratoInstituto Agrônomico (IAC), Centro de Análise e Pesquisa Tecnológica do Agronegócio dos Grãos e Fibras, Campinas, SP, Brazil.
Agronomical Institute of Campinas · BRUniversidade do Estado de Santa Catarina · BRUniversidade Tecnológica Federal do Paraná · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fusarium oxysporum f. sp. phaseoli (Fop) J.B. Kendrich & W.C. Snyder is the causal agent of Fusarium wilt of common bean (Phaseolus vulgaris L.). The objective of this study was to develop microsatellite markers (SSRs) to characterize the genetic diversity of Fop. Two libraries enriched with SSRs were developed and a total of 40 pairs of SSRs were characterized. Out of these, 15 SSRs were polymorphic for 42 Fop isolates. The number of alleles varied from two to ten, with an average of four alleles per locus and an average PIC (Polymorphic Information Content) of 0.38. The genetic diversity assessed by microsatellites for Fop was low, as expected for an asexual fungus, and not associated with geographic origin, but they were able to detect enough genetic variability among isolates in order to differentiate them. Microsatellites are a robust tool widely used for genetic fingerprinting and population structure analyses. SSRs for Fop may be an efficient tool for a better understanding of the ecology, epidemiology and evolution of this pathogen.

Identifiers

PMID32478796
PMCPMC7263423
OpenAlexW3029669201

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.