Evidence map›Paper›PMID 32478791›Full record

ArticleGenetics and molecular biology2020

Differential gene expression in response to water deficit in leaf and root tissues of soybean genotypes with contrasting tolerance profiles.

Rafaela Ribeiro Reis, Liliane Marcia Mertz-Henning, Juliana Marcolino-Gomes, Fabiana Aparecida Rodrigues, Silvana Rockenbach-Marin, Renata Fuganti-Pagliarini, Alessandra Koltun, Leandro Simões Azeredo Gonçalves, Alexandre Lima Nepomuceno

Abstract read
In one paragraph

Article in Genetics and molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Rafaela Ribeiro ReisUniversidade Estadual de Londrina, Departamento de Biologia e Departamento de Agronomia, Londrina, PR, Brazil.ORCID http://orcid.org/0000-0002-1564-4947
Liliane Marcia Mertz-HenningEmbrapa Soybean, Empresa Brasileira de Pesquisa Agropecuária, Londrina, PR, Brazil.
Juliana Marcolino-GomesEmbrapa Soybean, Empresa Brasileira de Pesquisa Agropecuária, Londrina, PR, Brazil.
Fabiana Aparecida RodriguesInstituto Federal de Educação, Ciência e Tecnologia de Mato Grosso, Coxim, MS, Brazil.
Silvana Rockenbach-MarinUniversidade Estadual de Londrina, Departamento de Biologia e Departamento de Agronomia, Londrina, PR, Brazil.
Renata Fuganti-PagliariniEmbrapa Soybean, Empresa Brasileira de Pesquisa Agropecuária, Londrina, PR, Brazil.
Alessandra KoltunUniversidade Estadual de Maringá, Maringá, PR, Brazil.ORCID http://orcid.org/0000-0001-8889-5264
Leandro Simões Azeredo GonçalvesUniversidade Estadual de Londrina, Departamento de Biologia e Departamento de Agronomia, Londrina, PR, Brazil.
Alexandre Lima NepomucenoEmbrapa Soybean, Empresa Brasileira de Pesquisa Agropecuária, Londrina, PR, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Water deficit is one of the major limitations to soybean production worldwide, yet the genetic basis of drought-responsive mechanisms in crops remains poorly understood. In order to study the gene expression patterns in leaves and roots of soybean, two contrasting genotypes, Embrapa 48 (drought-tolerant) and BR 16 (drought-sensitive), were evaluated under moderate and severe water deficit. Transcription factors from the AP2/EREBP and WRKY families were investigated. Embrapa 48 showed 770 more up-regulated genes than BR 16, in eight categories. In general, leaves presented more differentially expressed genes (DEGs) than roots. Embrapa 48 responded to water deficit faster than BR 16, presenting a greater number of DEGs since the first signs of drought. Embrapa 48 exhibited initial modulation of genes associated with stress, while maintaining the level of the ones related to basic functions. The genes expressed exclusively in the drought-tolerant cultivar, belonging to the category of dehydration responsive genes, and the ones with a contrasting expression pattern between the genotypes are examples of important candidates to confer tolerance to plants. Finally, this study identified genes of the AP2/EREBP and WRKY families related to drought tolerance.

Identifiers

PMID32478791
PMCPMC7263426

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.