Evidence map›Paper›PMID 32478280›Full record

ArticleAPL bioengineering2020

Retrospective clinical trial experimentally validates glioblastoma genome-wide pattern of DNA copy-number alterations predictor of survival.

Sri Priya Ponnapalli, Matthew W Bradley, Karen Devine, Jay Bowen, Sara E Coppens, Kristen M Leraas, Brett A Milash, Fuqiang Li, Huijuan Luo, Shi Qiu and 9 more

Abstract read
In one paragraph

Article in APL bioengineering, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Sri Priya PonnapalliScientific Computing and Imaging Institute, University of Utah, Salt Lake City, Utah 84112, USA.
Matthew W Bradley
Karen DevineDepartment of Population and Quantitative Health Sciences, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA.
Jay BowenThe Research Institute at Nationwide Children's Hospital, Columbus, Ohio 43205, USA.
Sara E CoppensThe Research Institute at Nationwide Children's Hospital, Columbus, Ohio 43205, USA.
Kristen M LeraasThe Research Institute at Nationwide Children's Hospital, Columbus, Ohio 43205, USA.
Brett A MilashCenter for High-Performance Computing, University of Utah, Salt Lake City, Utah 84112, USA.
Fuqiang LiBeijing Genomics Institute (BGI) -Shenzhen, Shenzhen, Guangdong 518083, China.
Huijuan LuoBeijing Genomics Institute (BGI) -Shenzhen, Shenzhen, Guangdong 518083, China.
Shi QiuBGI-Americas, Cambridge, Massachusetts 02142, USA.
Kui Wu
Huanming Yang
Carl T WittwerDepartment of Pathology, University of Utah, Salt Lake City, Utah 84112, USA.
Cheryl A Palmer
Randy L Jensen
Julie M Gastier-FosterThe Research Institute at Nationwide Children's Hospital, Columbus, Ohio 43205, USA.
Heidi A Hanson
Jill S Barnholtz-SloanDepartment of Population and Quantitative Health Sciences, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA.

Funding

Multi-Tensor Decompositions for Personalized Cancer Diagnostics and PrognosticsU01CA202144 · NCI · UNIVERSITY OF UTAH · PI ALTER, ORLY · 2015 to 2019
$3.4M
Subtyping Bladder Cancer: A Multi-omic, Exposure-informed, Genealogical Approach (MErGE)K07CA230150 · NCI · UNIVERSITY OF UTAH · PI HANSON, HEIDI ANNE · 2018 to 2021
$683k
From genomics to natural language processing: A protected environment for research computing in the health scienceS10OD021644 · OD · UNIVERSITY OF UTAH · PI CHEATHAM, THOMAS E. · 2017 to 2017
$494k
NCI NIH HHS K07 CA230150NCI NIH HHS U01 CA202144NIH HHS S10 OD021644
6 · The paper itself

Abstract

Modeling of genomic profiles from the Cancer Genome Atlas (TCGA) by using recently developed mathematical frameworks has associated a genome-wide pattern of DNA copy-number alterations with a shorter, roughly one-year, median survival time in glioblastoma (GBM) patients. Here, to experimentally test this relationship, we whole-genome sequenced DNA from tumor samples of patients. We show that the patients represent the U.S. adult GBM population in terms of most normal and disease phenotypes. Intratumor heterogeneity affects

Identifiers

PMID32478280
PMCPMC7229984

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.