Evidence map›Paper›PMID 32478218›Full record

ArticleACS omega2020

Free Solution Assay Signal Modulation in Variable-Stem-Length Hairpin Aptamers.

Michael N Kammer, Amanda K Kussrow, Ian R Olmsted, George W Jackson, Darryl J Bornhop

Erratum issuedAbstract read
In one paragraph

Article in ACS omega, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Michael N KammerDepartment of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, United States.
Amanda K KussrowDepartment of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, United States.
Ian R OlmstedDepartment of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, United States.
George W JacksonBase Pair Biotechnologies, Inc., Pearland, Texas 77584, United States.
Darryl J BornhopDepartment of Chemistry, Vanderbilt University, Nashville, Tennessee 37235, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interferometric measurements of free solution assays (FSAs) quantify changes in molecular conformation and hydration upon binding. Here, we demonstrate that aptamer probes designed to undergo varying levels of conformational change upon binding produce corresponding variations in FSA signals. A series of hairpin aptamers were synthesized for the small molecule (tenofovir) with identical loop regions that contain the binding pocket, with between 2 and 10 self-associating base pairings in the stem region. Aptamers selected for tenofovir showed a decrease in the FSA signal and binding affinity (increase in

Identifiers

PMID32478218
PMCPMC7254501

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.