Evidence map›Paper›PMID 32477694›Full record

ArticleAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science2020

Integrating Electronic Health Record Data into the ADEpedia-on-OHDSI Platform for Improved Signal Detection: A Case Study of Immune-related Adverse Events.

Yue Yu, Kathryn J Ruddy, Andrew Wen, Nansu Zong, Shintaro Tsuji, Jun Chen, Nilay D Shah, Guoqian Jiang

Open access · greenAbstract read
In one paragraph

Article in AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yue YuDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN.
Kathryn J RuddyDepartment of Oncology, Mayo Clinic, Rochester, MN.
Andrew WenDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN.
Nansu ZongDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN.
Shintaro TsujiDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN.
Jun ChenDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN.
Nilay D ShahDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN.
Guoqian JiangDepartment of Health Sciences Research, Mayo Clinic, Rochester, MN.
Mayo Clinic in Florida · USMayo Clinic in Arizona · US

Funding

Tools for standardizing clinical research metadata using HL7 FHIRU01HG009450 · NHGRI · MAYO CLINIC ROCHESTER · PI JIANG, GUOQIAN · 2016 to 2018
$1.4M
NHGRI NIH HHS U01 HG009450
6 · The paper itself

Abstract

With widespread adoption of electronic health records (EHRs), Real World Data and Real World Evidence (RWE) have been increasingly used by FDA for evaluating drug safety and effectiveness. However, integration of heterogeneous drug safety data sources and systems remains an impediment for effective pharmacovigilance studies. In an ongoing project, we have developed a next generation pharmacovigilance signal detection framework known as ADEpedia-on-OHDSI using the OMOP common data model (CDM). The objective of the study is to demonstrate the feasibility of the framework for integrating both spontaneous reporting data and EHR data for improved signal detection with a case study of immune-related adverse events. We first loaded the OMOP CDM with both recent and legacy FAERS (FDA Adverse Event Reporting System) data (from the time period between Jan. 2004 and Dec. 2018). We also integrated the clinical data from the Mayo Clinic EHR system for six oncological immunotherapy drugs. We implemented a signal detection algorithm and compared the timelines of positive signals detected from both FAERS and EHR data. We found that the signals detected from EHRs are 4 months earlier than signals detected from FAERS database (depending on the signal detection methods used) for the ipilimumab-induced hypopituitarism. Our CDM-based approach would be useful to provide a scalable solution to integrate both drug safety data and EHR data to generate RWE for improved signal detection.

Identifiers

PMID32477694
PMCPMC7233056
OpenAlexW3029827228

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.