Evidence map›Paper›PMID 32476560›Full record

ArticleRNA biology2020

RNA-protein coevolution study of Gemin5 uncovers the role of the PXSS motif of RBS1 domain for RNA binding.

Rosario Francisco-Velilla, Azman Embarc-Buh, Sergio Rangel-Guerrero, Sudipto Basu, Sudip Kundu, Encarnacion Martinez-Salas

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Rosario Francisco-VelillaCentro de Biología Molecular Severo Ochoa, CSIC-UAM , Madrid, Spain.ORCID 0000-0002-4328-8732
Azman Embarc-BuhCentro de Biología Molecular Severo Ochoa, CSIC-UAM , Madrid, Spain.ORCID 0000-0002-1980-942X
Sergio Rangel-GuerreroLaboratorio de Terapia Génica, Centro de Investigación y de Estudios Avanzados del I.P.N ., Ciudad de México, Mexico.
Sudipto BasuDepartment of Biophysics, Molecular Biology and Bioinformatics, University of Calcutta , Kolkata, India.
Sudip KunduDepartment of Biophysics, Molecular Biology and Bioinformatics, University of Calcutta , Kolkata, India.
Encarnacion Martinez-SalasCentro de Biología Molecular Severo Ochoa, CSIC-UAM , Madrid, Spain.ORCID 0000-0002-8432-5587
Centro de Biología Molecular Severo Ochoa · ESUniversity of Calcutta · INCentro de Investigación en Materiales Avanzados · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Regulation of protein synthesis is an essential step of gene expression. This process is under the control of cis-acting RNA elements and trans-acting factors. Gemin5 is a multifunctional RNA-binding protein organized in distinct domains. The protein bears a non-canonical RNA-binding site, designated RBS1, at the C-terminal end. Among other cellular RNAs, the RBS1 region recognizes a sequence located within the coding region of Gemin5 mRNA, termed H12. Expression of RBS1 stimulates translation of RNA reporters carrying the H12 sequence, counteracting the negative effect of Gemin5 on global protein synthesis. A computational analysis of RBS1 protein and H12 RNA variability across the evolutionary scale predicts coevolving pairs of amino acids and nucleotides. RBS1 footprint and gel-shift assays indicated a positive correlation between the identified coevolving pairs and RNA-protein interaction. The coevolving residues of RBS1 contribute to the recognition of stem-loop SL1, an RNA structural element of H12 that contains the coevolving nucleotides. Indeed, RBS1 proteins carrying substitutions on the coevolving residues P

Indexed as

Binding SitesRNA-Binding MotifsAmino Acid SequenceBiological EvolutionConserved SequenceNucleic Acid ConformationProtein BindingProtein ConformationProtein Interaction Domains and MotifsRNARNA-Binding ProteinsRNA, MessengerSMN Complex ProteinsGEMIN5 protein, humanRNARNA-Binding ProteinsRNA, MessengerSMN Complex Proteinscoevolving pairsGemin5RNA-bindingRNA-protein interactionRNA SHAPE reactivitytranslation control

Identifiers

PMID32476560
PMCPMC7549667
OpenAlexW3028655428

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.