Evidence map›Paper›PMID 32475409›Full record

ArticleMethods in enzymology2020

Covalent live-cell labeling of proteins using a photoreactive fluorogen.

Tewoderos M Ayele, Steve D Knutson, Jennifer M Heemstra

Abstract read
In one paragraph

Article in Methods in enzymology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Tewoderos M AyeleDepartment of Chemistry, Emory University, Atlanta, GA, United States.
Steve D KnutsonDepartment of Chemistry, Emory University, Atlanta, GA, United States.
Jennifer M HeemstraDepartment of Chemistry, Emory University, Atlanta, GA, United States. Electronic address: jen.heemstra@emory.edu.

Funding

Fluorescent mRNA Labeling Using Self-Alkylating RibozymesR01GM116991 · NIGMS · UNIVERSITY OF UTAH · PI HEEMSTRA, JENNIFER MARGARET · 2016 to 2020
$1.5M
NIGMS NIH HHS R01 GM116991
6 · The paper itself

Abstract

Fluorescence microscopy has dramatically advanced our understanding of the processes that drive biological systems by enabling the imaging and tracking of biomolecules of interest inside of living cells. In particular, proteins of interest can be genetically tagged with fluorescent proteins or labeled with small molecule fluorophore probes to enable visualization. However, both of these methods are generally limited in signal-to-background resolution and options are limited for achieving temporal control over labeling. Photoreactive "fluorogenic" dyes can overcome these limitations and enable user-defined crosslinking with low background fluorescence. In this chapter, we discuss current approaches for live cell protein labeling with particular emphasis on the novel use of photoreactive fluorogenic dyes for protein imaging. We further describe in detail the synthesis and characterization of a fluorogenic malachite green probe functionalized with a photoreactive diazirine crosslinker and illustrate how to apply this probe toward covalent photoaffinity labeling and imaging of target proteins in live cells.

Indexed as

Photoaffinity LabelsProteinsFluorescent DyesMicroscopy, FluorescenceFluorescent DyesPhotoaffinity LabelsProteinsFluorogenImagingLive-cellMicroscopyPhotoaffinityPhotocrosslinking

Identifiers

PMID32475409
PMCPMC7302685

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.