Evidence map›Paper›PMID 32475109›Full record

ArticleACS sensors2020

Nucleic Acid Quantitation with Log-Linear Response Hybridization Probe Sets.

Lucia R Wu, John Z Fang, Dmitriy Khodakov, David Yu Zhang

Abstract read
In one paragraph

Article in ACS sensors, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. High-Throughput Variant Detection Using a Color-Mixing Strategy.The Journal of molecular diagnostics : JMD · 2022
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Lucia R WuDepartment of Bioengineering, Rice University, Houston, Texas 77005, United States.ORCID 0000-0001-5051-9685
John Z FangDepartment of Bioengineering, Rice University, Houston, Texas 77005, United States.
Dmitriy KhodakovDepartment of Bioengineering, Rice University, Houston, Texas 77005, United States.
David Yu ZhangDepartment of Bioengineering, Rice University, Houston, Texas 77005, United States.ORCID 0000-0002-0213-7663

Funding

Enrichment of DNA/RNA Sequences based on Pre-equilibrium Hybridization KineticsR01HG008752 · NHGRI · RICE UNIVERSITY · PI VEISEH, OMID · 2016 to 2021
$3.0M
NHGRI NIH HHS R01 HG008752
6 · The paper itself

Abstract

Concentrations of different nucleic acid species in biological samples span many orders of magnitude. A real-time polymerase chain reaction maps the concentration of a target nucleic acid sequence log-linearly into cycle threshold to enable quantitation with a wide dynamic range but suffers from enzymatic biases. Here, we present a general design for constructing hybridization probe sets with highly log-linear response curves to enable accurate enzyme-free quantitation across large ranges (more than 6 logs) of target DNA concentrations. The sensitivity of each component probe is accurately adjusted via formulation stoichiometry to reduce the standard error of target quantitation down to 7%. As a proof of concept, we show multiplexed quantitation of three microRNA species in total RNA of the human brain and liver.

Indexed as

DNANucleic AcidsBase SequenceHumansNucleic Acid HybridizationReal-Time Polymerase Chain ReactionDNANucleic Acidsdynamic rangeenzyme-free biosensornucleic acid hybridizationnucleic acids thermodynamicsRNA quantitationtoehold probe

Identifiers

PMID32475109
PMCPMC7872156

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.