Evidence map›Paper›PMID 32471505›Full record

ArticleParasites & vectors2020

Real-time RT-PCR assay to detect Granada virus and the related Massilia and Arrabida phleboviruses.

Laura Davó, Laura Herrero, Maria Paz Sánchez-Seco, Nuria Labiod, David Roiz, Elena Gómez-Díaz, Lourdes Hernandez, Jordi Figuerola, Ana Vázquez

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Laura DavóCentro Nacional de Microbiología, Instituto de Salud Carlos III, 28220, Madrid, Spain.
Laura HerreroCentro Nacional de Microbiología, Instituto de Salud Carlos III, 28220, Madrid, Spain.
Maria Paz Sánchez-SecoCentro Nacional de Microbiología, Instituto de Salud Carlos III, 28220, Madrid, Spain.
Nuria LabiodCentro Nacional de Microbiología, Instituto de Salud Carlos III, 28220, Madrid, Spain.
David RoizEstación Biológica de Doñana (EBD), Consejo Superior de Investigaciones Científicas, 41092, Seville, Spain.
Elena Gómez-DíazEstación Biológica de Doñana (EBD), Consejo Superior de Investigaciones Científicas, 41092, Seville, Spain.
Lourdes HernandezCentro Nacional de Microbiología, Instituto de Salud Carlos III, 28220, Madrid, Spain.
Jordi FiguerolaEstación Biológica de Doñana (EBD), Consejo Superior de Investigaciones Científicas, 41092, Seville, Spain.
Ana VázquezCentro Nacional de Microbiología, Instituto de Salud Carlos III, 28220, Madrid, Spain. a.vazquez@isciii.es.
Instituto de Salud Carlos III · ESCentro Nacional de Microbiologia · ESCentro de Investigación Biomédica en Red de Epidemiología y Salud Pública · ESConsejo Superior de Investigaciones Científicas · ESInstituto de Parasitología y Biomedicina "López - Neyra" · ESUniversidad Autónoma de Madrid · ES

Funding

European Commission ERG-PARIS-276838Instituto de Salud Carlos III CP13/00114Instituto de Salud Carlos III PI14CIII/00014Ministerio de Economía y Competitividad CGL2009-11445
6 · The paper itself

Abstract

backgroundGranada virus belongs to the genus Phlebovirus within the Naples serocomplex and was detected for the first time in sand flies from Spain in 2003. Seroprevalence studies have revealed that Granada virus may infect humans with most cases being asymptomatic. Moreover, recent studies in vector samples revealed that the related Massilia and Arrabida phleboviruses could be also circulating in Spain. The objective of this study was to develop and assess a new sensitive real-time RT-PCR assay for Granada virus diagnosis able to detect the related phleboviruses Massilia and Arrabida.

methodsTwo specific primers and one unique probe to detect Granada, Massilia and Arrabida viruses, without differentiating between them, were designed targeting the conserved L-segment of their genome. Sensitivity was assessed using 10-fold serial dilutions of quantified in vitro DNA samples. Specificity was evaluated by testing different genomic RNA extracted from other representative phleboviruses. The new assay was used for virus detection in sand flies collected in 2012 from the Balearic Archipelago, a touristic hotspot in the Mediterranean.

resultsThe real-time RT-PCR assay exhibited a sensitivity per reaction of 19 copies for Granada and Arrabida, and 16 copies for Massilia. No other related phleboviruses were detected. From the 37 pools of sand fly samples studied from four different Balearic Islands, we detected one positive in the island of Cabrera.

conclusionsTo our knowledge, the method described here is the first real-time RT-PCR designed to detect Granada virus and the related Massilia and Arrabida phleboviruses. The study demonstrated that this is a rapid, robust and reliable assay for the accurate diagnosis of human infections as well as for virus surveillance in vectors.

Indexed as

AnimalsDNA PrimersFemaleGenome, ViralMalePhlebovirusPhylogenyPsychodidaeReal-Time Polymerase Chain ReactionRNA, ViralSensitivity and SpecificitySpainDNA PrimersRNA, ViralArrabida virusDiagnosisGranada virusMassilia virusReal-time RT-PCRSurveillance

Identifiers

PMID32471505
PMCPMC7257231
OpenAlexW3030113380

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.