Evidence map›Paper›PMID 32471496›Full record

ArticleLipids in health and disease2020

Ubiquitin-specific protease as the underlying gene biomarker for aortic stenosis.

Yin Yang, Lian-Qun Wang, Bo-Chen Yao, Zhi-Gang Guo

Open access · goldAbstract read
In one paragraph

Article in Lipids in health and disease, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yin YangDepartment of Cardiac Surgery, Tianjin Chest Hospital, No. 261 South Taierzhuang Road, Jinnan District, Tianjin, 300222, China.
Lian-Qun WangDepartment of Cardiac Surgery, Tianjin Chest Hospital, No. 261 South Taierzhuang Road, Jinnan District, Tianjin, 300222, China.
Bo-Chen YaoDepartment of Cardiac Surgery, Tianjin Chest Hospital, No. 261 South Taierzhuang Road, Jinnan District, Tianjin, 300222, China.
Zhi-Gang GuoDepartment of Cardiac Surgery, Tianjin Chest Hospital, No. 261 South Taierzhuang Road, Jinnan District, Tianjin, 300222, China. gzg8967@163.com.
Tianjin Chest Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAortic stenosis is a common heart valvular disease whose pathological processes include an inflammatory reaction and lipid accumulation. However, its detailed pathogenesis is yet to be completely elucidated. Therefore, it is of great significance to further explore the molecular mechanisms of aortic stenosis.

methodsFour datasets were downloaded from the Gene Expression Omnibus (GEO) database. Firstly, the differently expressed genes (DEGs) were screened between control and aortic stenosis samples. Secondly, weighted gene co-expression network analysis (WGCNA) was performed to find the highly relevant gene modules. Enrichment analysis and protein-protein interaction (PPI) networking were also performed, then Cytoscape was used to identify hub genes. Finally, the six participants (3 control participants and 3 patients with aortic stenosis) were recruited at the Tianjin Chest Hospital. In order to verify the expression level of USP14, several molecular experiments were performed, including hematoxylin-eosin (HE) staining, immunohistochemistry, immunofluorescence technology, real time-quantitative polymerase chain reaction (RT-qPCR), and western blotting.

resultsA total of 9636 DEGs were found between the control and aortic stenosis samples. The DEGs were mainly enriched in the autophagy-animal, cellular lipid catabolic process, apoptosis, and glycoside metabolic process categories. Eleven hub genes were identified via four different algorithms. Following verification of the patient samples, Ubiquitin-specific protease 14 (USP14) was found to be displayed at higher levels in the aortic stenosis samples.

conclusionUSP14 might be involved in the occurrence and development of aortic stenosis, so it would be a molecular target for early diagnosis and specific treatment of aortic stenosis. There is a significant association between the high expression of USP14 and aortic stenosis, indicating that this gene may be a genetic risk factor for aortic stenosis.

Indexed as

Aortic Valve StenosisBiomarkersGene Expression ProfilingGene Expression RegulationHumansProtein Interaction MapsUbiquitinUbiquitin-Specific ProteasesUbiquitin ThiolesteraseBiomarkersUbiquitinUbiquitin-Specific ProteasesUbiquitin ThiolesteraseUSP14 protein, humanAortic stenosisBioinformatics analysisGene biomarkerLipid metabolismUbiquitin-specific protease 14

Identifiers

PMID32471496
PMCPMC7260852
OpenAlexW3031419097

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.