Evidence map›Paper›PMID 32470328›Full record

ArticleCell host & microbe2020

Targeted Depletion of Bacteria from Mixed Populations by Programmable Adhesion with Antagonistic Competitor Cells.

See-Yeun Ting, Esteban Martínez-García, Shuo Huang, Savannah K Bertolli, Katherine A Kelly, Kevin J Cutler, Elizabeth D Su, Hui Zhi, Qing Tang, Matthew C Radey and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell host & microbe, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed, 1 pooled it
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 1 synthesis or guideline pooled it, 79 citations in OpenAlex.

  1. Understanding the gut microbiota and sarcopenia: a systematic review.Journal of cachexia, sarcopenia and muscle · 2021
    Pooled it
  2. A programmableApplied and environmental microbiology · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Reprogrammed SimCells for antimicrobial therapy.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Review
  8. Article
  9. Review
  10. CommensalGut · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Exploiting bacteria for cancer immunotherapy.Nature reviews. Clinical oncology · 2024
    Review
  16. Emerging methylation-based approaches in microbiome engineering.Biotechnology for biofuels and bioproducts · 2024
    Review
  17. Article
  18. Review
  19. Review
  20. Ligand-DisplayingbioRxiv : the preprint server for biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

See-Yeun TingDepartment of Microbiology, University of Washington School of Medicine, Seattle, WA 98195, USA.
Esteban Martínez-GarcíaSystem Biology Program, National Center of Biotechnology CSIC, 28049 Madrid, Spain.
Shuo HuangDepartment of Microbiology, University of Washington School of Medicine, Seattle, WA 98195, USA.
Savannah K BertolliDepartment of Microbiology, University of Washington School of Medicine, Seattle, WA 98195, USA.
Katherine A KellyDepartment of Microbiology, University of Washington School of Medicine, Seattle, WA 98195, USA.
Kevin J CutlerDepartment of Physics, University of Washington, Seattle, WA 98195, USA.
Elizabeth D SuDepartment of Microbiology, University of Washington School of Medicine, Seattle, WA 98195, USA.
Hui ZhiDivision of Host-Microbe Systems & Therapeutics, Department of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.
Qing TangDepartment of Microbiology, University of Washington School of Medicine, Seattle, WA 98195, USA.
Matthew C RadeyDepartment of Microbiology, University of Washington School of Medicine, Seattle, WA 98195, USA.
Manuela RaffatelluDivision of Host-Microbe Systems & Therapeutics, Department of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA 92093, USA; Chiba University-UC San Diego Center for Mucosal Immunology, Allergy, and Vaccines (CU-UCSD cMAV), La Jolla, CA 92093, USA.
S Brook PetersonDepartment of Microbiology, University of Washington School of Medicine, Seattle, WA 98195, USA.
Víctor de LorenzoSystem Biology Program, National Center of Biotechnology CSIC, 28049 Madrid, Spain.
Joseph D MougousDepartment of Microbiology, University of Washington School of Medicine, Seattle, WA 98195, USA; Department of Biochemistry, University of Washington School of Medicine, Seattle, WA 98195, USA; Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA. Electronic address: mougous@uw.edu.
University of Washington · USCentro Nacional de Biotecnología · ESUniversity of California San Diego · USHoward Hughes Medical Institute · US

Funding

Type VI secretion effectors and interbacterial competition in vivoR01AI080609 · NIAID · YALE UNIVERSITY · PI MOUGOUS, JOSEPH DAVID · 2009 to 2025
$6.7M
C3-Dependent Intracellular Killing in Innate Immunity and Bacterial PathogenesisR01AI145325 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NIZET, VICTOR, RAFFATELLU, MANUELA · 2019 to 2023
$3.1M
Nutritional immunity during Salmonella infectionR01AI126277 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RAFFATELLU, MANUELA · 2016 to 2020
$1.9M
Development of siderophore-based vaccines against non-typhoidal Salmonella infectionR01AI114625 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NOLAN, ELIZABETH M, RAFFATELLU, MANUELA · 2015 to 2019
$1.9M
Nutritional immunity during Salmonella infectionR37AI126277 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Manuela Raffatellu · 2023 to 2026
$1.8M
Harnessing iron acquisition to hinder enterobacterial pathogenesisR56AI114625 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NOLAN, ELIZABETH M, RAFFATELLU, MANUELA · 2022 to 2022
$400k
NIAID NIH HHS R01 AI080609NIAID NIH HHS R01 AI114625NIAID NIH HHS R01 AI126277NIAID NIH HHS R01 AI145325NIAID NIH HHS R37 AI126277NIAID NIH HHS R56 AI114625
6 · The paper itself

Abstract

Selective and targeted removal of individual species or strains of bacteria from complex communities can be desirable over traditional, broadly acting antibacterials in several contexts. However, generalizable strategies that accomplish this with high specificity have been slow to emerge. Here we develop programmed inhibitor cells (PICs) that direct the potent antibacterial activity of the type VI secretion system (T6SS) against specified target cells. The PICs express surface-displayed nanobodies that mediate antigen-specific cell-cell adhesion to effectively overcome the barrier to T6SS activity in fluid conditions. We demonstrate the capacity of PICs to efficiently deplete low-abundance target bacteria without significant collateral damage to complex microbial communities. The only known requirements for PIC targeting are a Gram-negative cell envelope and a unique cell surface antigen; therefore, this approach should be generalizable to a wide array of bacteria and find application in medical, research, and environmental settings.

Indexed as

AnimalsAnti-Bacterial AgentsBacterial AdhesionBacterial Physiological PhenomenaGastrointestinal MicrobiomeGram-Negative BacteriaMiceMice, Inbred C57BLType VI Secretion SystemsAnti-Bacterial AgentsType VI Secretion Systemscommunityinterbacterialmicrobiomephageprobiotic

Identifiers

PMID32470328
PMCPMC7725374
OpenAlexW3029565319

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.