Evidence map›Paper›PMID 32469861›Full record

ArticlePLoS genetics2020

Yeast mismatch repair components are required for stable inheritance of gene silencing.

Qian Liu, Xuefeng Zhu, Michelle Lindström, Yonghong Shi, Ju Zheng, Xinxin Hao, Claes M Gustafsson, Beidong Liu

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. [NKD1 promotes glucose uptake in colon cancer cells by activating YWHAE transcription].Nan fang yi ke da xue xue bao = Journal of Southern Medical University · 2023
    Article
  6. Epigenetic Regulation of Antifungal Drug Resistance.Journal of fungi (Basel, Switzerland) · 2022
    Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Qian LiuDepartment of Chemistry and Molecular Biology, University of Gothenburg, Medicinaregatan, Goteborg, Sweden.
Xuefeng ZhuInstitute of Biomedicine, University of Gothenburg, Goteborg, Sweden.ORCID 0000-0002-4759-4446
Michelle LindströmDepartment of Chemistry and Molecular Biology, University of Gothenburg, Medicinaregatan, Goteborg, Sweden.ORCID 0000-0002-6526-7051
Yonghong ShiInstitute of Biomedicine, University of Gothenburg, Goteborg, Sweden.
Ju ZhengDepartment of Chemistry and Molecular Biology, University of Gothenburg, Medicinaregatan, Goteborg, Sweden.ORCID 0000-0002-4703-1192
Xinxin HaoDepartment of Chemistry and Molecular Biology, University of Gothenburg, Medicinaregatan, Goteborg, Sweden.ORCID 0000-0001-5758-6290
Claes M GustafssonInstitute of Biomedicine, University of Gothenburg, Goteborg, Sweden.ORCID 0000-0003-3531-8468
Beidong LiuDepartment of Chemistry and Molecular Biology, University of Gothenburg, Medicinaregatan, Goteborg, Sweden.ORCID 0000-0001-6052-8411
University of Gothenburg · SESpine Center Göteborg · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alterations in epigenetic silencing have been associated with ageing and tumour formation. Although substantial efforts have been made towards understanding the mechanisms of gene silencing, novel regulators in this process remain to be identified. To systematically search for components governing epigenetic silencing, we developed a genome-wide silencing screen for yeast (Saccharomyces cerevisiae) silent mating type locus HMR. Unexpectedly, the screen identified the mismatch repair (MMR) components Pms1, Mlh1, and Msh2 as being required for silencing at this locus. We further found that the identified genes were also required for proper silencing in telomeres. More intriguingly, the MMR mutants caused a redistribution of Sir2 deacetylase, from silent mating type loci and telomeres to rDNA regions. As a consequence, acetylation levels at histone positions H3K14, H3K56, and H4K16 were increased at silent mating type loci and telomeres but were decreased in rDNA regions. Moreover, knockdown of MMR components in human HEK293T cells increased subtelomeric DUX4 gene expression. Our work reveals that MMR components are required for stable inheritance of gene silencing patterns and establishes a link between the MMR machinery and the control of epigenetic silencing.

Indexed as

AcetylationDNA Mismatch RepairEpigenesis, GeneticGene SilencingGenes, Mating Type, FungalHeredityHistonesMutL Protein Homolog 1MutL ProteinsMutS Homolog 2 ProteinSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeSirtuin 2TelomereHistonesMLH1 protein, S cerevisiaeMSH2 protein, S cerevisiaeMutL Protein Homolog 1MutL ProteinsMutS Homolog 2 ProteinPMS1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeSIR2 protein, S cerevisiaeSirtuin 2

Identifiers

PMID32469861
PMCPMC7286534
OpenAlexW3031943507

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.