Evidence map›Paper›PMID 32469082›Full record

ArticleCancer2020

Genome-defined African ancestry is associated with distinct mutations and worse survival in patients with diffuse large B-cell lymphoma.

Michelle J Lee, Jean L Koff, Jeffrey M Switchenko, C Ileen Jhaney, R Andrew Harkins, Sharvil P Patel, Sandeep S Dave, Christopher R Flowers

Open access · bronzeAbstract read
In one paragraph

Article in Cancer, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Michelle J LeeEmory University School of Medicine, Atlanta, Georgia, USA.ORCID 0000-0002-8411-4333
Jean L KoffDepartment of Hematology and Medical Oncology, Winship Cancer Institute, Emory University, Atlanta, Georgia, USA.ORCID 0000-0003-4414-0489
Jeffrey M SwitchenkoDepartment of Biostatistics and Bioinformatics, Emory University, Atlanta, Georgia, USA.ORCID 0000-0002-5563-9325
C Ileen JhaneyDepartment of Hematology and Medical Oncology, Winship Cancer Institute, Emory University, Atlanta, Georgia, USA.
R Andrew HarkinsEmory University School of Medicine, Atlanta, Georgia, USA.
Sharvil P PatelDepartment of Hematology and Medical Oncology, Winship Cancer Institute, Emory University, Atlanta, Georgia, USA.
Sandeep S DaveCenter for Genomic and Computational Biology, Duke Cancer Institute, Duke University, Durham, North Carolina, USA.
Christopher R FlowersDepartment of Hematology and Medical Oncology, Winship Cancer Institute, Emory University, Atlanta, Georgia, USA.ORCID 0000-0002-9524-3990
Emory University · USDuke University · USThe University of Texas MD Anderson Cancer Center · US

Funding

Winship Cancer Institute Cancer Center Support GrantP30CA138292 · NCI · EMORY UNIVERSITY · PI Suresh S Ramalingam · 2009 to 2026
$47.5M
Informatics Tools for Quantitative Digital Pathology Profiling and Integrated Prognostic ModelingU01CA220401 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI COOPER, LEE, FLOWERS, CHRISTOPHER R · 2018 to 2021
$1.3M
Mentored Patient Oriented Research in LymphomaK24CA208132 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI FLOWERS, CHRISTOPHER R · 2016 to 2020
$822k
Biological Variants Underlying Racial Differences in LymphomaR21CA158686 · NCI · EMORY UNIVERSITY · PI FLOWERS, CHRISTOPHER R · 2012 to 2013
$371k
Burroughs Wellcome Research FundNCI NIH HHS K24 CA208132NCI NIH HHS P30 CA138292NCI NIH HHS R21 CA158686NCI NIH HHS U01 CA220401V FoundationWinship Cancer Institute of Emory University and NIH/NCI P30CA138292
6 · The paper itself

Abstract

backgroundSignificant racial differences have been observed in the incidence and clinical outcomes of diffuse large B-cell lymphoma (DLBCL) in the United States, but to the authors' knowledge it remains unclear whether genomic differences contribute to these disparities.

methodsTo understand the influences of genetic ancestry on tumor genomic alterations, the authors estimated the genetic ancestry of 1001 previously described patients with DLBCL using unsupervised model-based Admixture global ancestry analysis applied to exome sequencing data and examined the mutational profile of 150 DLBCL driver genes in tumors obtained from this cohort.

resultsGlobal ancestry prediction identified 619 patients with >90% European ancestry, 81 patients with >90% African ancestry, and 50 patients with >90% Asian ancestry. Compared with patients with DLBCL with European ancestry, patients with African ancestry were aged >10 years younger at the time of diagnosis and were more likely to present with B symptoms, elevated serum lactate dehydrogenase, extranodal disease, and advanced stage disease. Patients with African ancestry demonstrated worse overall survival compared with patients with European ancestry (median, 4.9 years vs 8.8 years; P = .04). Recurrent mutations of MLL2 (KMT2D), HIST1H1E, MYD88, BCL2, and PIM1 were found across all ancestry groups, suggesting shared mechanisms underlying tumor biology. The authors also identified 6 DLBCL driver genes that were more commonly mutated in patients with African ancestry compared with patients with European ancestry: ATM (21.0% vs 7.75%; P < .001), MGA (19.7% vs 5.33%; P < .001), SETD2 (17.3% vs 5.17%; P < .001), TET2 (12.3% vs 5.82%; P = .029), MLL3 (KMT2C) (11.1% vs 4.36%; P = .013), and DNMT3A (11.1% vs 4.52%; P = .016).

conclusionsDistinct prevalence and patterns of mutation highlight an important difference in the mutational landscapes of DLBCL arising in different ancestry groups. To the authors' knowledge, the results of the current study provide the first-ever characterization of genetic alterations among patients with African descent who are diagnosed with DLBCL.

Indexed as

PrognosisAdultAgedAsian PeopleBlack PeopleCohort StudiesDisease-Free SurvivalDNA-Binding ProteinsExomeExome SequencingFemaleGenome, HumanHistonesHumansLymphoma, Large B-Cell, DiffuseMaleBCL2 protein, humanDNA-Binding ProteinsH1-4 protein, humanHistonesKMT2D protein, humanMYD88 protein, humanMyeloid Differentiation Factor 88Neoplasm ProteinsProto-Oncogene Proteins c-bcl-2African continental ancestry groupdiffuse large B-cell lymphomamutationracial factors

Identifiers

PMID32469082
PMCPMC7494053
OpenAlexW3030475523

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.