Evidence map›Paper›PMID 32467599›Full record

ArticleEuropean journal of human genetics : EJHG2020

The genetic architecture of Stargardt macular dystrophy (STGD1): a longitudinal 40-year study in a genetic isolate.

Jane S Green, Darren D O'Rielly, Justin A Pater, Jim Houston, Hoda Rajabi, Dante Galutira, Tammy Benteau, Amy Sheaves, Nelly Abdelfatah, Donna Bautista and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Stargardt Disease Due to an Intronic Mutation in theInternational medical case reports journal · 2022
    Article
  7. Review
  8. The genetic landscape of inherited eye disorders in 74 consecutive families from the United Arab Emirates.American journal of medical genetics. Part C, Seminars in medical genetics · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Jane S Green *Faculty of Medicine, Memorial University, St. John's, NL, A1B 3V6, Canada.
Darren D O'Rielly *Faculty of Medicine, Memorial University, St. John's, NL, A1B 3V6, Canada.ORCID http://orcid.org/0000-0002-4287-8589
Justin A PaterFaculty of Medicine, Memorial University, St. John's, NL, A1B 3V6, Canada.
Jim HoustonFaculty of Medicine, Memorial University, St. John's, NL, A1B 3V6, Canada.
Hoda RajabiFaculty of Medicine, Memorial University, St. John's, NL, A1B 3V6, Canada.
Dante GalutiraFaculty of Medicine, Memorial University, St. John's, NL, A1B 3V6, Canada.
Tammy BenteauFaculty of Medicine, Memorial University, St. John's, NL, A1B 3V6, Canada.
Amy SheavesFaculty of Medicine, Memorial University, St. John's, NL, A1B 3V6, Canada.
Nelly AbdelfatahFaculty of Medicine, Memorial University, St. John's, NL, A1B 3V6, Canada.
Donna BautistaFaculty of Medicine, Memorial University, St. John's, NL, A1B 3V6, Canada.
Jim WhelanFaculty of Medicine, Memorial University, St. John's, NL, A1B 3V6, Canada.
Terry-Lynn YoungFaculty of Medicine, Memorial University, St. John's, NL, A1B 3V6, Canada. tlyoung@mun.ca.
Memorial University of Newfoundland · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stargardt disease (STGD1) is a form of inherited retinal dystrophy attributed to variants affecting function of the large ABCA4 gene and is arguably the most complex monogenic disease. Therapeutic trials in patients depend on identifying causal ABCA4 variants in trans, which is complicated by extreme allelic and clinical heterogeneity. We report the genetic architecture of STGD1 in the young genetically isolated population of Newfoundland, Canada. Population-based clinical recruitment over several decades yielded 29 STGD1 and STGD1-like families (15 multiplex, 14 singleton). Family interviews and public archival records reveal the vast majority of pedigree founders to be of English extraction. Full gene sequencing and haplotype analysis yielded a high solve rate (38/41 cases; 92.7%) for STGD1 and identified 16 causative STGD1 alleles, including a novel deletion (NM_000350.3: ABCA4 c.67-1delG). Several STGD1 alleles of European origin (including NM_000350.3: ABCA4 c.5714 + 5G>A and NM_000350.3: ABCA4 c.5461-10T>C) have drifted to a relatively high population frequency due to founder effect. We report on retinal disease progression in homozygous patients, providing valuable allele-specific insights. The least involved retinal disease is seen in patients homozygous for c.5714 + 5G>A variant, a so-called "mild" variant which is sufficient to precipitate a STGD1 phenotype in the absence of other pathogenic variants in the coding region and intron/exon boundaries of ABCA4. The most severe retinal disease is observed in cases with ABCA4 c.[5461-10T>C;5603A>T] complex allele. We discuss the advantages of determining genetic architecture in genetic isolates in order to begin to meet the grand challenge of human genetics.

Indexed as

Gene FrequencyATP-Binding Cassette TransportersFemaleFounder EffectHomozygoteHumansMaleMutationPedigreeStargardt DiseaseABCA4 protein, humanATP-Binding Cassette Transporters

Identifiers

PMID32467599
PMCPMC7316815
OpenAlexW3031251651

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.