Evidence map›Paper›PMID 32467359›Full record

ArticleJournal of clinical microbiology2020

Influence of Different Inactivation Methods on Severe Acute Respiratory Syndrome Coronavirus 2 RNA Copy Number.

Hailong Chen, Rui Wu, Yuan Xing, Quanli Du, Zerun Xue, Yanli Xi, Yujie Yang, Yangni Deng, Yuewen Han, Kaixin Li and 15 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of clinical microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Effectiveness of TRIzol in Inactivating Animal Pathogens.Applied biosafety : journal of the American Biological Safety Association · 2023
    Review
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  6. Review
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  9. Determining Viral Disinfection Efficacy of Hot Water Laundering.Journal of visualized experiments : JoVE · 2022
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Evaluation of aPathogens (Basel, Switzerland) · 2021
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 4 institutions in 1 country.

Hailong Chen *Xi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Rui Wu *Xi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Yuan Xing *Xi'an Medical University, Xi'an, Shaanxi, China.
Quanli DuXi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Zerun XueXi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Yanli XiXi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Yujie YangXi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Yangni DengXi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Yuewen HanXi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Kaixin LiXi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Yang LuanXi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Yalan ZhangXi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Xiaoguang WeiXi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Tongtong YuXi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Hao LiXi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Lingxiang ZhuNational Research Institute for Family Planning, Beijing, China.
Shisheng SuDepartment of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China.
Hao LianTargetingOne Corporation, Beijing, China.
Linping LuTargetingOne Corporation, Beijing, China.
Chianru TanDepartment of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China.
Haichao ZhengXi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Baozhong ChenXi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Pengbo YuShaanxi Center for Disease Control and Prevention, Xi'an, Shaanxi, China.
Yong GuoDepartment of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China yongguo@tsinghua.edu.cn mark7447@xiancdc.cn.
Chaofeng MaXi'an Center for Disease Control and Prevention, Xi'an, Shaanxi, China yongguo@tsinghua.edu.cn mark7447@xiancdc.cn.ORCID https://orcid.org/0000-0001-9834-8766
Xian Center for Disease Control and Prevention · CNTsinghua University · CNTianjin Municipal Research Institute for Family Planning · CNXi'an Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The outbreak of coronavirus disease 2019 (COVID-19) has spread across the world and was characterized as a pandemic. To protect medical laboratory personnel from infection, most laboratories inactivate the virus causing COVID-19, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), in clinical samples before testing. However, the effect of inactivation on the detection results remains unknown. Here, we used a digital PCR assay to determine the absolute SARS-CoV-2 RNA copy number in 63 nasopharyngeal swab samples and assess the effect of inactivation methods on viral RNA copy number. Viral inactivation was performed by three different methods: (i) incubation with the TRIzol LS reagent for 10 min at room temperature, (ii) heating in a water bath at 56°C for 30 min, and (iii) high-temperature treatment, including autoclaving at 121°C for 20 min, boiling at 100°C for 20 min, and heating at 80°C for 20 min. Compared to the amount of RNA in the original sample, TRIzol treatment destroyed 47.54% of the nucleocapsid protein (N) gene and 39.85% of open reading frame (ORF) 1ab. For samples treated at 56°C for 30 min, the copy number of the N gene and ORF 1ab was reduced by 48.55% and 56.40%, respectively. The viral RNA copy number dropped by 50 to 66% after heating at 80°C for 20 min. Nearly no viral RNA was detected after autoclaving at 121°C or boiling at 100°C for 20 min. These results indicate that inactivation reduced the quantity of detectable viral RNA and may cause false-negative results, especially in weakly positive cases. Thus, use of the TRIzol reagent rather than heat inactivation is recommended for sample inactivation, as the TRIzol reagent had the least effect on the RNA copy number among the tested methods.

Indexed as

AdolescentAdultAgedAged, 80 and overBetacoronavirusDisinfectantsDisinfectionFemaleGene DosageHot TemperatureHumansMaleMiddle AgedPolymerase Chain ReactionRNA, ViralSARS-CoV-2DisinfectantsRNA, Viralcopy numberCOVID-19digital PCRinactivation

Identifiers

PMID32467359
PMCPMC7383554
OpenAlexW3030570789

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.