Evidence map›Paper›PMID 32467129›Full record

ArticleG3 (Bethesda, Md.)2020

Dissecting the Genetic Architecture of Cystatin C in Diversity Outbred Mice.

M Nazmul Huda, Melissa VerHague, Jody Albright, Tangi Smallwood, Timothy A Bell, Excel Que, Darla R Miller, Baback Roshanravan, Hooman Allayee, Fernando Pardo Manuel de Villena and 1 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Fifteen years of the Diversity Outbred mouse model: a review.Mammalian genome : official journal of the International Mammalian Genome Society · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

M Nazmul HudaObesity and Metabolism Research Unit, Western Human Nutrition Research Center, USDA, ARS, Davis, California 95616.ORCID 0000-0003-2775-4470
Melissa VerHagueNutrition Research Institute, University of North Carolina Kannapolis, North Carolina 28081.
Jody AlbrightDepartment of Genetics, University of North Carolina at Chapel Hill, North Carolina 27599.
Tangi SmallwoodDepartment of Genetics, University of North Carolina at Chapel Hill, North Carolina 27599.
Timothy A BellDepartment of Genetics, University of North Carolina at Chapel Hill, North Carolina 27599.
Excel QueObesity and Metabolism Research Unit, Western Human Nutrition Research Center, USDA, ARS, Davis, California 95616.
Darla R MillerDepartment of Genetics, University of North Carolina at Chapel Hill, North Carolina 27599.
Baback RoshanravanDepartment of Medicine, Division of Nephrology, University of California, Davis, Davis, California 95616, and.
Hooman AllayeeDepartments of Preventive Medicine and Biochemistry & Molecular Medicine, Keck School of Medicine, University of Southern California, Los Angeles California 90033.
Fernando Pardo Manuel de VillenaDepartment of Genetics, University of North Carolina at Chapel Hill, North Carolina 27599.ORCID 0000-0002-5738-5795
Brian J BennettObesity and Metabolism Research Unit, Western Human Nutrition Research Center, USDA, ARS, Davis, California 95616, brian.bennett@ars.usda.gov.ORCID 0000-0002-0766-3195
University of North Carolina at Chapel Hill · USWestern Human Nutrition Research Center · USDavid H. Murdock Research Institute · USUniversity of California, Davis · USUniversity of Southern California · US

Funding

UNIV OF NORTH CAROLINA CLINICAL NUTRITION RESEARCH UNITP30DK056350 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Ian Michael Carroll · 1999 to 2026
$31.6M
Resource Section - Core 001U42OD010924 · OD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Folami Ideraabdullah · 2012 to 2026
$24.5M
The UNC Chapel Hill Superfund Research Program (UNC-SRP)P42ES031007 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Rebecca Fry · 2020 to 2026
$22.2M
Translational CoreP30AG038070 · NIA · JACKSON LABORATORY · PI Gary A Churchill · 2010 to 2026
$19.3M
Southern California Children's Environmental Health Center (SC-CEHC)P01ES022845 · NIEHS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MCCONNELL, ROB S · 2013 to 2018
$4.0M
INTEGRATIVE GENETIC APPROACHES TO GENE-AIR POLLUTION INTERACTIONS IN ASTHMAR01ES021801 · NIEHS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI AKBARI, OMID, ALLAYEE, HOOMAN · 2012 to 2016
$3.9M
Role of Glycine Metabolism in Cardiovascular DiseaseR01HL133169 · NHLBI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ALLAYEE, HOOMAN · 2017 to 2020
$3.3M
Genetic and Environmental Determinants of Asthma EndophenotypesR01ES025786 · NIEHS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI AKBARI, OMID, ALLAYEE, HOOMAN · 2015 to 2019
$2.8M
Systems Genetic Studies of TMAO regulation and AtherosclerosisR01HL128572 · NHLBI · U.S. AGRICULTURAL RESEARCH SERVICE · PI BENNETT, BRIAN JOSEPH · 2015 to 2019
$1.4M
Skeletal muscle dysfunction in persons with chronic kidney diseaseK23DK099442 · NIDDK · UNIVERSITY OF WASHINGTON · PI ROSHANRAVAN, BABACK · 2013 to 2017
$777k
Mitochondrial bioenergetics in persons with chronic kidney diseaseR03DK114502 · NIDDK · UNIVERSITY OF WASHINGTON · PI ROSHANRAVAN, BABACK · 2018 to 2019
$155k
NHLBI NIH HHS R01 HL128572NHLBI NIH HHS R01 HL133169NIA NIH HHS P30 AG038070NIDDK NIH HHS K23 DK099442NIDDK NIH HHS P30 DK056350NIDDK NIH HHS R03 DK114502NIEHS NIH HHS P01 ES022845NIEHS NIH HHS P42 ES031007NIEHS NIH HHS R01 ES021801NIEHS NIH HHS R01 ES025786NIH HHS U42 OD010924
6 · The paper itself

Abstract

Plasma concentration of Cystatin C (CysC) level is a biomarker of glomerular filtration rate in the kidney. We use a Systems Genetics approach to investigate the genetic determinants of plasma CysC concentration. To do so we perform Quantitative Trait Loci (QTL) and expression QTL (eQTL) analysis of 120 Diversity Outbred (DO) female mice, 56 weeks of age. We performed network analysis of kidney gene expression to determine if the gene modules with common functions are associated with kidney biomarkers of chronic kidney diseases. Our data demonstrates that plasma concentrations and kidney mRNA levels of CysC are associated with genetic variation and are transcriptionally coregulated by immune genes. Specifically, Type-I interferon signaling genes are coexpressed with

Indexed as

Collaborative Cross MiceCystatin CAnimalsBiomarkersFemaleMiceQuantitative Trait LociBiomarkersCystatin CCystatin CKidney biomarkersMPPMultiparent Advanced Generation Inter-Cross (MAGIC)Multi parental modelsmultiparental populationsQuantitative trait lociType-I interferon signalling pathway

Identifiers

PMID32467129
PMCPMC7341122
OpenAlexW3029431182

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.