Evidence map›Paper›PMID 32463828›Full record

ArticlePLoS genetics2020

Exome-wide association study reveals largely distinct gene sets underlying specific resistance to dengue virus types 1 and 3 in Aedes aegypti.

Laura B Dickson, Sarah H Merkling, Mathieu Gautier, Amine Ghozlane, Davy Jiolle, Christophe Paupy, Diego Ayala, Isabelle Moltini-Conclois, Albin Fontaine, Louis Lambrechts

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Sexual selection purges mutation load, but not overall genetic diversity, decreasing vulnerability to extinction.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  14. Vector Competence ofPathogens (Basel, Switzerland) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Laura B DicksonInsect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France.
Sarah H MerklingInsect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France.ORCID 0000-0002-6823-4474
Mathieu GautierCBGP, INRAE, CIRAD, IRD, Montpellier SupAgro, Univ. Montpellier, Montpellier, France.ORCID 0000-0001-7257-5880
Amine GhozlaneHub de Bioinformatique et Biostatistique-Département Biologie Computationnelle, Institut Pasteur, USR 3756 CNRS, Paris, France.ORCID 0000-0001-7670-6235
Davy JiolleInsect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France.ORCID 0000-0002-7420-5768
Christophe PaupyMIVEGEC, Univ. Montpellier, IRD, CNRS, Montpellier, France.
Diego AyalaMIVEGEC, Univ. Montpellier, IRD, CNRS, Montpellier, France.ORCID 0000-0003-4726-580X
Isabelle Moltini-ConcloisInsect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France.ORCID 0000-0002-1975-713X
Albin FontaineInsect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France.ORCID 0000-0001-6869-6516
Louis LambrechtsInsect-Virus Interactions Unit, Institut Pasteur, UMR2000, CNRS, Paris, France.ORCID 0000-0001-5958-2138
Centre National de la Recherche Scientifique · FRCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although specific interactions between host and pathogen genotypes have been well documented in invertebrates, the identification of host genes involved in discriminating pathogen genotypes remains a challenge. In the mosquito Aedes aegypti, the main dengue virus (DENV) vector worldwide, statistical associations between host genetic markers and DENV types or strains were previously detected, but the host genes underlying this genetic specificity have not been identified. In particular, it is unknown whether DENV type- or strain-specific resistance relies on allelic variants of the same genes or on distinct gene sets. Here, we investigated the genetic architecture of DENV resistance in a population of Ae. aegypti from Bakoumba, Gabon, which displays a stronger resistance phenotype to DENV type 1 (DENV-1) than to DENV type 3 (DENV-3) infection. Following experimental exposure to either DENV-1 or DENV-3, we sequenced the exomes of large phenotypic pools of mosquitoes that are either resistant or susceptible to each DENV type. Using variation in single-nucleotide polymorphism (SNP) frequencies among the pools, we computed empirical p values based on average gene scores adjusted for the differences in SNP counts, to identify genes associated with infection in a DENV type-specific manner. Among the top 5% most significant genes, 263 genes were significantly associated with resistance to both DENV-1 and DENV-3, 287 genes were only associated with DENV-1 resistance and 290 were only associated with DENV-3 resistance. The shared significant genes were enriched in genes with ATP binding activity and sulfur compound transmembrane transporter activity, whereas the genes uniquely associated with DENV-3 resistance were enriched in genes with zinc ion binding activity. Together, these results indicate that specific resistance to different DENV types relies on largely non-overlapping sets of genes in this Ae. aegypti population and pave the way for further mechanistic studies.

Indexed as

Disease ResistanceAedesAnimalsCells, CulturedDengue VirusExome SequencingFemaleGabonGenotypeInsect ProteinsPhenotypePolymorphism, Single NucleotideRNA, ViralSpecies SpecificityInsect ProteinsRNA, Viral

Identifiers

PMID32463828
PMCPMC7282673
OpenAlexW3032475322

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.