Evidence map›Paper›PMID 32461612›Full record

ArticleNature communications2020

Vulnerabilities in coronavirus glycan shields despite extensive glycosylation.

Yasunori Watanabe, Zachary T Berndsen, Jayna Raghwani, Gemma E Seabright, Joel D Allen, Oliver G Pybus, Jason S McLellan, Ian A Wilson, Thomas A Bowden, Andrew B Ward and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 223 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
223citing papers in PubMed, 1 pooled it
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

223 citing papers in PubMed, 1 synthesis or guideline pooled it, 395 citations in OpenAlex.

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163 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Yasunori WatanabeSchool of Biological Sciences, University of Southampton, Southampton, SO17 1BJ, UK.
Zachary T BerndsenDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, 92037, USA.
Jayna RaghwaniBig Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7LF, UK.
Gemma E SeabrightSchool of Biological Sciences, University of Southampton, Southampton, SO17 1BJ, UK.
Joel D AllenSchool of Biological Sciences, University of Southampton, Southampton, SO17 1BJ, UK.ORCID http://orcid.org/0000-0003-2547-968X
Oliver G PybusDepartment of Zoology, University of Oxford, Oxford, OX1 3PS, UK.
Jason S McLellanDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA.ORCID http://orcid.org/0000-0003-3991-542X
Ian A WilsonDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, 92037, USA.ORCID http://orcid.org/0000-0002-6469-2419
Thomas A BowdenDivision of Structural Biology, University of Oxford, Wellcome Centre for Human Genetics, Oxford, OX3 7BN, UK.ORCID http://orcid.org/0000-0002-8066-8785
Andrew B WardDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, 92037, USA.ORCID http://orcid.org/0000-0001-7153-3769
Max CrispinSchool of Biological Sciences, University of Southampton, Southampton, SO17 1BJ, UK. max.crispin@soton.ac.uk.ORCID http://orcid.org/0000-0002-1072-2694
Scripps Research Institute · USUniversity of Oxford · GBCentre for Human Genetics · GBUniversity of Southampton · GBThe University of Texas at Austin · US

Funding

Identification of neutralizing epitopes on SARS-CoV-2 spike for design of vaccines and small-molecule antiviralsUM1AI144462 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI BURTON, DENNIS R. · 2019 to 2025
$201.6M
Structure, Function and Antigenicity of Coronavirus Spike ProteinsR01AI127521 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI MCLELLAN, JASON SCOTT, WARD, ANDREW BARRETT · 2017 to 2021
$3.1M
Exploiting Vulnerability on Influenza VirusR56AI127371 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 2017 to 2017
$730k
Medical Research Council MR/S007555/1NIAID NIH HHS R01 AI127521NIAID NIH HHS R56 AI127371NIAID NIH HHS UM1 AI144462Wellcome TrustWellcome Trust 203141/Z/16/Z
6 · The paper itself

Abstract

Severe acute respiratory syndrome (SARS) and Middle East respiratory syndrome (MERS) coronaviruses (CoVs) are zoonotic pathogens with high fatality rates and pandemic potential. Vaccine development focuses on the principal target of the neutralizing humoral immune response, the spike (S) glycoprotein. Coronavirus S proteins are extensively glycosylated, encoding around 66-87 N-linked glycosylation sites per trimeric spike. Here, we reveal a specific area of high glycan density on MERS S that results in the formation of oligomannose-type glycan clusters, which were absent on SARS and HKU1 CoVs. We provide a comparison of the global glycan density of coronavirus spikes with other viral proteins including HIV-1 envelope, Lassa virus glycoprotein complex, and influenza hemagglutinin, where glycosylation plays a known role in shielding immunogenic epitopes. Overall, our data reveal how organisation of glycosylation across class I viral fusion proteins influence not only individual glycan compositions but also the immunological pressure across the protein surface.

Indexed as

Middle East Respiratory Syndrome CoronavirusPolysaccharidesCoronavirus InfectionsCryoelectron MicroscopyEpitopesGlycoproteinsGlycosylationHEK293 CellsHIV-1HumansImmune EvasionLassa virusOrthomyxoviridaeSpike Glycoprotein, CoronavirusViral Fusion ProteinsViral ProteinsEpitopesGlycoproteinsPolysaccharidesSpike Glycoprotein, CoronavirusViral Fusion ProteinsViral Proteins

Identifiers

PMID32461612
PMCPMC7253482
OpenAlexW3032445823

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.