Evidence map›Paper›PMID 32461320›Full record

ArticleJournal of virology2020

Butyrate Reprograms Expression of Specific Interferon-Stimulated Genes.

Mahesh Chemudupati, Adam D Kenney, Anna C Smith, Robert J Fillinger, Lizhi Zhang, Ashley Zani, Shan-Lu Liu, Matthew Z Anderson, Amit Sharma, Jacob S Yount

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 1 synthesis or guideline pooled it, 65 citations in OpenAlex.

  1. COVID-19 alters human microbiomes: a meta-analysis.Frontiers in cellular and infection microbiology · 2023
    Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Mahesh ChemudupatiDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA.
Adam D KenneyDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA.
Anna C SmithDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA.
Robert J FillingerDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA.
Lizhi ZhangDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA.
Ashley ZaniDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA.
Shan-Lu LiuDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA.
Matthew Z AndersonDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA.ORCID 0000-0003-1683-2170
Amit SharmaDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA.
Jacob S YountDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA Jacob.Yount@osumc.edu.
The Ohio State University · US

Funding

Mechanisms of innate resistance to virus infectionsR01AI130110 · NIAID · OHIO STATE UNIVERSITY · PI Jacob Yount · 2017 to 2026
$4.3M
Integrative Training in Biomedical SystemsT32GM068412 · NIGMS · OHIO STATE UNIVERSITY · PI PARVIN, JEFFREY D · 2005 to 2020
$2.4M
Interdisciplinary Program in Microbe-Host BiologyT32AI112542 · NIAID · OHIO STATE UNIVERSITY · PI JUSTICE, SHERYL S, WOZNIAK, DANIEL J · 2014 to 2018
$644k
Inhibition of cell-to-cell fusion by interferon-induced proteinsR21AI142256 · NIAID · OHIO STATE UNIVERSITY · PI YOUNT, JACOB · 2019 to 2020
$429k
Mechanisms of Cardioprotection by the Innate Immune System During Influenza Virus InfectionsR21AI146690 · NIAID · OHIO STATE UNIVERSITY · PI RAJARAM, MURUGESAN, YOUNT, JACOB · 2019 to 2020
$415k
NIAID NIH HHS R01 AI130110NIAID NIH HHS R21 AI142256NIAID NIH HHS R21 AI146690NIAID NIH HHS T32 AI112542NIGMS NIH HHS T32 GM068412
6 · The paper itself

Abstract

Butyrate is an abundant metabolite produced by gut microbiota. While butyrate is a known histone deacetylase inhibitor that activates expression of many genes involved in immune system pathways, its effects on virus infections and on the antiviral type I interferon (IFN) response have not been adequately investigated. We found that butyrate increases cellular infection with viruses relevant to human and animal health, including influenza virus, reovirus, HIV-1, human metapneumovirus, and vesicular stomatitis virus. Mechanistically, butyrate suppresses levels of specific antiviral IFN-stimulated gene (ISG) products, such as RIG-I and IFITM3, in human and mouse cells without inhibiting IFN-induced phosphorylation or nuclear translocation of the STAT1 and STAT2 transcription factors. Accordingly, we discovered that although butyrate globally increases baseline expression of more than 800 cellular genes, it strongly represses IFN-induced expression of 60% of ISGs and upregulates 3% of ISGs. Our findings reveal that there are differences in the IFN responsiveness of major subsets of ISGs depending on the presence of butyrate in the cell environment, and overall, they identify a new mechanism by which butyrate influences virus infection of cells.

Indexed as

AnimalsAntiviral AgentsButyratesCell LineGene ExpressionHumansImmunity, InnateInterferonsInterferon Type IMembrane ProteinsMiceRNA-Binding ProteinsSignal TransductionSTAT1 Transcription FactorSTAT2 Transcription FactorVirus DiseasesAntiviral AgentsButyratesInterferonsInterferon Type IMembrane ProteinsRNA-Binding ProteinsSTAT1 Transcription FactorSTAT2 Transcription FactorinterferonISG

Identifiers

PMID32461320
PMCPMC7394905
OpenAlexW3031219063

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.